Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage

Table 1 Trimmed sequencing data

Sample description		Num. of clean reads	Avg. length	Total length (bp)
Seed	Control	11,032,891	85.7 ± 2.2	945,089,151 ± 24,735,160
Seed	Submergence	12,595,149	85.4 ± 3.0	1,075,509,880 ± 38,212,576
Stem	Control	12,765,878	87.7 ± 3.3	1,119,579,740 ± 42,307,259
Stem	Submergence	12,654,727	88.0 ± 1.7	1,113,925,917 ± 22,110,523
Leaf	Control	16,376,497	90.8 ± 2.8	1,486,987,894 ± 46,242,526
Leaf	Submergence	17,673,004	90.9 ± 2.8	1,606,463,841 ± 49,099,815

The results of the clean reads, which were obtained from the rice grain, stem, and leaf organs by trimming the short reads that were sequenced with the Illumina Hiseq platform. RNA was extracted from the samples (seed, stem, and leaf), which were treated with muddy water-irrigation for 4 days on the 14th day after heading, and sequencing was performed on the extracted RNA, which was the same RNA sample used for real-time PCR with three replicates

ISSN: 1471-2164