Table 1 General genomic features of the different Dickeya fangzhongdai genomes
D. fangzhongdai strain | Strain origin | Source of isolation/host | Year of isolation | Sequencing technology | Accessions | Genome size (bp) | No. of contigs | No. of scaffolds | GC ratio (%) | Predicted PEGs | Predicted RNAs |
|---|---|---|---|---|---|---|---|---|---|---|---|
JS5T | China | Pear tree | 2009 | Illumina HiSeq | CP025003 | 5,027,163 | – | 1 | 56.8 | 4478 | 98 |
B16 | Slovenia | Phalaenopsis orchid | 2010 | Illimina and Ion Torrent | JXBN00000000 | 4,843,044 | 53 | – | 56.8 | 4603 | 56 |
S1 | Slovenia | Phalaenopsis orchid | 2012 | Illimina and Ion Torrent | JXBO00000000 | 4,962,950 | 51 | – | 56.9 | 4738 | 74 |
MK7 | Scotland (UK) | River water | – | 454 | AOOO01000000 | 4,905,506 | 66 | 21 | 56.6 | 4648 | 67 |
NCPPB 3274 | St. Lucia | Aglaonema | 1983 | 454 | AOOH01000000 | 5,115,016 | 62 | 15 | 56.5 | 4838 | 82 |
M005 | Malaya | Waterfall | 2013 | Illumina MiSeq | JSXD00000000 | 5,105,736 | 138 | – | 56.6 | 4784 | 73 |
M074 | Malaya | Waterfall | 2013 | Illumina MiSeq | JRWY00000000 | 4,952,363 | 145 | – | 56.8 | 4630 | 71 |
ND14b | Malaya | Waterfall | 2013 | PacBio RSII | CP009460 | 5,052,868 | 1 | – | 56.9 | 4634 | 97 |