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Table 1 General genomic features of the different Dickeya fangzhongdai genomes

From: Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

D. fangzhongdai strain Strain origin Source of isolation/host Year of isolation Sequencing technology Accessions Genome size (bp) No. of contigs No. of scaffolds GC ratio (%) Predicted PEGs Predicted RNAs
JS5T China Pear tree 2009 Illumina HiSeq CP025003 5,027,163 1 56.8 4478 98
B16 Slovenia Phalaenopsis orchid 2010 Illimina and Ion Torrent JXBN00000000 4,843,044 53 56.8 4603 56
S1 Slovenia Phalaenopsis orchid 2012 Illimina and Ion Torrent JXBO00000000 4,962,950 51 56.9 4738 74
MK7 Scotland (UK) River water 454 AOOO01000000 4,905,506 66 21 56.6 4648 67
NCPPB 3274 St. Lucia Aglaonema 1983 454 AOOH01000000 5,115,016 62 15 56.5 4838 82
M005 Malaya Waterfall 2013 Illumina MiSeq JSXD00000000 5,105,736 138 56.6 4784 73
M074 Malaya Waterfall 2013 Illumina MiSeq JRWY00000000 4,952,363 145 56.8 4630 71
ND14b Malaya Waterfall 2013 PacBio RSII CP009460 5,052,868 1 56.9 4634 97