Table 3 Dickeya fangzhongdai species-specific genes^a

Dickeya_fangzhongdai_ND14b.0429

Pectate lyase

Pec lyase superfamily

protein secretion

–

–

–

–

Dickeya_fangzhongdai_ND14b.0753

Ketosteroid isomerase-related protein

NTF2 like superfamily

metabolism

–

–

–

Comamonas testosteroni

Dickeya_fangzhongdai_ND14b.0754

Thioredoxin-like protein clustered with PA0057

Thioredoxin like superfamily

Posttranslational modification

–

–

–

Comamonas testosteroni

Dickeya_fangzhongdai_ND14b.0755

Nitrogen assimilation regulatory protein Nac

HTH superfamily, Periplasmic binding protein Type 2 superfamily

regulation

–

–

–

Polaromonas sp. CF318

Dickeya_fangzhongdai_ND14b.0976

Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

GAT_1 superfamily, HTH_AraC superfamily

regulation

–

–

–

Burkholderia lata

Dickeya_fangzhongdai_ND14b.1018

Pyruvate decarboxylase (EC 4.1.1.1); Alpha-keto-acid decarboxylase (EC 4.1.1.-)

TPP_enzyme_PYR, TPP_enzyme_M, TPP_enzyme_C superfamily

metabolism

COG3961

GH

K04103

Pectobacterium carotovorum

Dickeya_fangzhongdai_ND14b.1127

Chaperone protein hscC (Hsc62)

HSP70 superfamily, NBD_sugar kinase/HSP70/actin superfamily

Others

COG443

O

K04043,K04045

Pectobacterium carotovorum

Dickeya_fangzhongdai_ND14b.1128

Uncharacterized J domain-containing protein YbeS, predicted chaperone

DnaJ superfamily, DUF805 supefamily

Others

–

–

–

–

Dickeya_fangzhongdai_ND14b.1129

Glycosiltransferase family protein

DUF1266 superfamily

undefined

–

–

–

Pectobacterium carotovorum

Dickeya_fangzhongdai_ND14b.1510

MarR family transcriptional regulator

HTH superfamily

regulation

COG1733

–

–

Burkholderia sp. H160

Dickeya_fangzhongdai_ND14b.1511

Hypothetical transmembrane protein

–

hypothetical protein

COG2259

S

–

Xanthomonas arboricola

Dickeya_fangzhongdai_ND14b.1828

Hypothetical protein

DUF1501 superfamily

hypothetical protein

COG4102

S

–

–

Dickeya_fangzhongdai_ND14b.1829

Glycosyltransferase

Glyco_transf_GTA_type suerfamily

metabolism of cell wall

COG1215

M

K00698

–

Dickeya_fangzhongdai_ND14b.2289

Molybdopterin-guanine dinucleotide biosynthesis protein MobB

p-loop NTPase superfamily

metabolism

COG1763

H

K03753

–

Dickeya_fangzhongdai_ND14b.2311

hypothetical protein

DUF1127 superfamily

hypothetical protein

–

–

–

–

Dickeya_fangzhongdai_ND14b.2427

hypothetical protein

–

hypothetical protein

–

–

–

Pectobacterium carotovorum

Dickeya_fangzhongdai_ND14b.2499

Permeases of the major facilitator superfamily

MPS superfamily

transport

–

–

K18326

Erwinia toletana

Dickeya_fangzhongdai_ND14b.2993

hypothetical protein

DUF2631 superfamily, PilP superfamily

hypothetical protein

–

–

K12291

Serratia sp. ATCC 39006

Dickeya_fangzhongdai_ND14b.3123

Siderophore biosynthesis non-ribosomal peptide synthetase modules

Adenylate forming domain, Class I superfamily

metabolism of secondary metabolites

COG1020

Q

–

Serratia sp. ATCC 39006

Dickeya_fangzhongdai_ND14b.3971

GNAT family N-acetyltransferase

RimI domain, NAT_SF superfamily

Others

–

–

–

–

Dickeya_fangzhongdai_ND14b.3994

Quinone oxidoreductase (EC 1.6.5.5)

MDR superfamily

metabolism

COG0604

C

K00344

Rahnella aquatilis

Dickeya_fangzhongdai_ND14b.3997

Transcriptional regulator, LysR family

HTH superfamily, Periplasmic binding protein Type 2 superfamily

regulation

–

–

–

Pantoea sp. AS-PWVM4

Dickeya_fangzhongdai_ND14b.4503

Quaternary ammonium compound-resistance protein SugE

EamA superfamily

transport

COG2076

P

K03297,K11741

Cronobacter

Dickeya_fangzhongdai_ND14b.4575

Hypothetical protein

DUF1311 superfamily

hypothetical protein

–

–

–

–

Dickeya_fangzhongdai_ND14b.4576

Putative cytoplasmic protein

DUF4764 superfamily, Pesticin superfamily

undefined

–

–

–

–