Gene | Subunit | Genome Position | Gene Position | Nucleotide Change | Codon Change | Edit Position within Codon | Amino Acid Change | Sequencing Depth | Editing Efficiency |
---|---|---|---|---|---|---|---|---|---|
matK | exon | 2963 | 710 | G > A | UCU > UUU | 2 | S > F | 37 | 70 |
matK | exon | 3518 | 155 | G > A | UCU > UUU | 2 | S > F | 38 | 84 |
rps16 | exon | 5795 | 212 | G > A | UCA > UUA | 2 | S > L | 179 | 82 |
rps16 | intron | 6389 | – | G > A | – | – | – | 47 | 81 |
atpA | exon | 12,099 | 914 | G > A | UCA > UUA | 2 | S > L | 120 | 98 |
atpA | exon | 12,222 | 791 | G > A | CCG > CUG | 2 | P > L | 189 | 98 |
atpF | exon | 14,294 | 92 | G > A | CCA > CUA | 2 | P > L | 199 | 81 |
IGR-1 | IGR | 16,247 | – | G > A | – | – | – | 229 | 97 |
rps2 | exon | 17,781 | 248 | G > A | UCA > UUA | 2 | S > L | 85 | 95 |
rpoC2 | exon | 18,698 | 3761 | G > A | UCA > UUA | 2 | S > L | 41 | 98 |
rpoC2 | exon | 20,661 | 1798 | G > T | GGU > AGU | 1 | G > S | 33 | 18 |
rpoC2 | exon | 20,763 | 1696 | G > C | CUC > GUC | 1 | L > V | 34 | 12 |
rpoC1 | exon | 24,185 | 488 | G > A | UCA > UUA | 2 | S > L | 79 | 80 |
rpoC1 | exon | 25,453 | 41 | G > A | UCA > UUA | 2 | S > L | 20 | 65 |
rpoB | exon | 26,307 | 2426 | G > A | UCA > UUA | 2 | S > L | 11 | 100 |
rpoB | exon | 26,733 | 2000 | G > A | UCU > UUU | 2 | S > F | 15 | 93 |
rpoB | exon | 27,555 | 1178 | G > A | UCG > UUG | 2 | S > L | 12 | 67 |
rpoB | exon | 28,167 | 566 | G > A | UCG > UUG | 2 | S > L | 6 | 17 |
rpoB | exon | 28,182 | 551 | G > A | UCA > UUA | 2 | S > L | 9 | 44 |
rpoB | exon | 28,395 | 338 | G > A | UCU > UUU | 2 | S > F | 22 | 86 |
IGR − 2 | IGR | 35,186 | – | A > C | – | – | – | 23 | 17 |
psbZ | exon | 39,947 | 50 | C > U | UCA > UUA | 2 | S > L | 176 | 26 |
rps14 | exon | 41,250 | 149 | G > A | CCA > CUA | 2 | P > L | 210 | 90 |
rps14 | exon | 41,319 | 80 | G > A | CCC > CUC | 2 | P > L | 240 | 88 |
psaA | exon | 44,617 | 1395 | G > A | CCC > CCU | 3 | P > P | 95 | 37 |
IGR-3 | IGR | 51,329 | – | C > U | – | – | – | 614 | 17 |
ndhK | exon | 54,554 | 65 | G > A | UCA > UUA | 2 | S > L | 826 | 89 |
ndhC | exon | 54,719 | 323 | G > A | ACU > AUU | 2 | T > I | 816 | 96 |
IGR-4 | IGR | 59,062 | – | G > A | – | – | – | 349 | 28 |
accD | exon | 62,731 | 815 | C > U | UCG > UUG | 2 | S > L | 65 | 92 |
accD | exon | 63,322 | 1406 | C > U | CCA > CUA | 2 | P > L | 302 | 82 |
psaI | exon | 64,351 | 88 | C > U | CAU > UAU | 1 | H > Y | 89 | 84 |
cemA | exon | 66,260 | 492 | C > U | UUC > UUU | 3 | F > F | 84 | 49 |
IGR-5 | IGR | 67,928 | – | C > U | – | – | – | 31 | 13 |
psbF | exon | 69,182 | 77 | G > A | UCU > UUU | 2 | S > F | 26 | 96 |
psbF | 5’UTR | 69,260 | -2 | G > A | – | – | – | 39 | 62 |
psbE | exon | 69,306 | 214 | G > A | CCU > UCU | 1 | P > S | 46 | 96 |
petL | exon | 70,671 | 5 | C > U | CCU > CUU | 2 | P > L | 28 | 46 |
IGR-6 | IGR | 71,784 | – | C > U | – | – | – | 1163 | 99 |
clpP | exon | 74,986 | 559 | G > A | CAU > UAU | 1 | H > Y | 33 | 97 |
psbN | exon | 79,461 | 29 | G > A | UCU > UUU | 2 | S > F | 70 | 30 |
petB | intron | 80,119 | – | C > T | – | – | – | 56 | 18 |
petB | exon | 81,188 | 418 | C > U | CGG > UGG | 1 | R > W | 206 | 94 |
petB | exon | 81,381 | 611 | C > U | CCA > CUA | 2 | P > L | 207 | 94 |
rpoA | exon | 83,130 | 830 | G > A | UCA > UUA | 2 | S > L | 144 | 70 |
rpoA | exon | 83,760 | 200 | G > A | UCU > UUU | 2 | S > F | 76 | 83 |
rps11 | exon | 84,338 | 108 | G > A | UUC > UUU | 3 | F > F | 357 | 55 |
rpl23 | exon | 91,217 | 89 | G > A | UCA > UUA | 2 | S > L | 25 | 84 |
rpl23 | exon | 91,235 | 71 | G > A | UCU > UUU | 2 | S > F | 31 | 97 |
ycf2 | exon | 98,495 | 6863 | A > G | UAA > UGA | 2 | *>* | 6 | 50 |
ndhB | exon | 99,901 | 1487 | G > A | CCA > CUA | 2 | P > L | 20 | 80 |
ndhB | exon | 99,955 | 1433 | G > A | UCA > UUA | 2 | S > L | 15 | 40 |
ndhB | exon | 100,133 | 1255 | G > A | CAU > UAU | 1 | H > Y | 17 | 100 |
ndhB | exon | 100,276 | 1112 | G > A | UCA > UUA | 2 | S > L | 25 | 88 |
ndhB | exon | 100,558 | 830 | G > A | UCA > UUA | 2 | S > L | 10 | 70 |
ndhB | exon | 101,328 | 746 | G > A | UCU > UUU | 2 | S > F | 9 | 22 |
ndhB | exon | 101,337 | 737 | G > A | CCA > CUA | 2 | P > L | 11 | 64 |
ndhB | exon | 101,488 | 586 | G > A | CAU > UAU | 1 | H > Y | 11 | 82 |
ndhB | exon | 101,607 | 467 | G > A | CCA > CUA | 2 | P > L | 23 | 91 |
ndhB | exon | 101,925 | 149 | G > A | UCA > UUA | 2 | S > L | 23 | 91 |
rps12 | intron | 103,149 | – | G > A | – | – | – | 87 | 67 |
rps12 | intron | 103,290 | – | G > A | – | – | – | 115 | 85 |
IGR-7 | IGR | 104,462 | – | G > A | – | – | – | 629 | 30 |
rrn16S | exon | 106,489 | 577 | G > A/U/C | – | – | – | 1404 | 49 |
rrn16S | exon | 107,021 | 45 | U > A/G | – | – | – | 1112 | 41 |
rrn23S | exon | 111,418 | 881 | U > A/G/C | – | – | – | 3163 | 73 |
ndhF | exon | 116,076 | 1734 | C > U | AUG > AUA | 3 | M > I | 23 | 26 |
ndhF | exon | 117,520 | 290 | G > A | UCA > UUA | 2 | S > L | 21 | 38 |
ndhD | exon | 121,618 | 1298 | G > A | UCA > UUA | 2 | S > L | 52 | 92 |
ndhD | exon | 122,029 | 887 | G > A | CCC > CUC | 2 | P > L | 12 | 58 |
ndhD | exon | 122,242 | 674 | G > A | UCA > UUA | 2 | S > L | 40 | 85 |
ndhD | exon | 122,317 | 599 | G > A | UCA > UUA | 2 | S > L | 46 | 76 |
ndhD | exon | 122,533 | 383 | G > A | UCA > UUA | 2 | S > L | 28 | 75 |
ndhD | exon | 122,914 | 2 | G > A | ACG > AUG | 2 | T > M | 33 | 64 |
ndhE | exon | 123,626 | 233 | G > A | CCA > CUA | 2 | P > L | 110 | 9 |
ndhA | exon | 125,765 | 961 | G > A | CCU > UCU | 1 | P > S | 334 | 94 |
ndhA | exon | 127,589 | 341 | G > A | UCA > UUA | 2 | S > L | 99 | 79 |
ndhH | exon | 128,810 | 303 | G > A | AUC > AUU | 3 | I > I | 44 | 25 |
ycf1 | exon | 131,464 | 4236 | G > A | CGC > CGU | 3 | R > R | 160 | 19 |
ycf1 | exon | 133,945 | 1755 | G > A | UUC > UUU | 3 | F > F | 250 | 17 |