Table 2 Functional and Classical Pseudogenes in A. ovis
From: The Anaplasma ovis genome reveals a high proportion of pseudogenes
Ψa |  |  |  | Classical Ψ | Functional Gene | ||
|---|---|---|---|---|---|---|---|
Locus ID | name | Lengthb | Functional Ψ | frameshift | truncated | Locus ID | Length |
AOV_00155 | msp2Ψ1 | 336 | X |  |  | msp2 AOV_04300 | 1215 |
AOV_00600 | msp2Ψ2 | 675 | X |  |  | ||
AOV_03655 | msp2Ψ3 | 750 | X |  |  | ||
AOV_04515 | msp2Ψ4 | 396 | X |  |  | ||
AOV_04865 | msp2Ψ5 | 414 | X |  |  | ||
AOV_05215 | msp2Ψ6 | 483 | X |  |  | ||
AOV_04490 | msp2Ψ7 | 579 | X |  |  | ||
AOV_00040 | msp3Ψ1 | 2043 | X |  |  | msp3 AOV_03915 | 2426 |
AOV_00045 | msp3Ψ2 | 1602 | X |  |  | ||
AOV_00050 | msp3Ψ3 | 1851 | X |  |  | ||
AOV_00145 | msp3Ψ5 | 2148 | X |  |  | ||
AOV_00605 | msp3Ψ6 | 1752 | X |  |  | ||
AOV_03985 | msp3Ψ8 | 2691 | X |  |  | ||
AOV_04500 | msp3Ψ9 | 2127 | X |  |  | ||
AOV_04855 | msp3Ψ10 | 1932 | X |  |  | ||
AOV_00810 | Hc | 445 |  | X |  | – |  |
AOV_01085 | mutL | 1892 |  | X |  | – |  |
AOV_02395 | mgtE | 1348 |  | X |  | – |  |
AOV_02655 | fadB | 1131 |  | X |  | – |  |
AOV_02780 | H | 1690 |  | X |  | – |  |
AOV_02875 | lytB | 919 |  | X |  | – |  |
AOV_03945 | H | 2421 |  | X |  | – |  |
AOV_00065 | msp3Ψ4 | 438 |  |  | X | AOV_03915 | 2426 |
AOV_00115 | omp14 | 573 | Â | Â | X | AOV_00035 | 1158 |
AOV_00515 | sucD | 223 | Â | Â | X | AOV_00660 | 885 |
AOV_01020 | thiE | 384 | Â | Â | X | AOV_01015 | 1026 |
AOV_01025 | thiE | 252 | Â | Â | X | ||
AOV_01820 | msp1a | 1611 | Â | Â | X | AOV_01835 | 2175 |
AOV_01970 | infB | 387 | Â | Â | X | AOV_02590 | 2502 |
AOV_01975 | infB | 702 | Â | Â | X | ||
AOV_02035 | pccB | 2035 | Â | Â | X | AOV_02715 | 1533 |
AOV_02120 | purA | 195 | Â | Â | X | AOV_03080 | 1281 |
AOV_02180 | purA | 195 | Â | Â | X | ||
AOV_02195 | trxB2 | 228 | Â | Â | X | AOV_02205 | 1023 |
AOV_02200 | trxB2 | 669 | Â | Â | X | ||
AOV_02415 | pepA | 1158 | Â | Â | X | AOV_03525 | 1497 |
AOV_02440 | pepA | 540 | Â | Â | X | ||
AOV_02835 | lpdA | 420 | Â | Â | X | AOV_02845 | 1416 |
AOV_03085 | ObgE | 747 | Â | Â | X | AOV_02115 | 1044 |
AOV_03660 | msp3Ψ7 | 444 |  |  | X | AOV_03915 | 2426 |
AOV_04305 | virB2a | 342 | Â | Â | X | several | \( \overline{x} \) =378 |
AOV_04495 | virB2a | 318 | Â | Â | X | ||
AOV_04995 | omp6 | 516 | Â | Â | X | AOV_04980 | 1179 |
AOV_05010 | H | 333 |  |  | X | – |  |