Table 1 Summary of RAD-seq data for ten male and ten female Scylla paramamosain
Sample | Barcode | Raw reads | Raw bases | Clean reads | Clean bases | Average read length (bp) | Clean reads rate (%) | Clean bases rate (%) |
|---|---|---|---|---|---|---|---|---|
Female | ||||||||
 F1A | ACGTA | 24,557,238 | 3,646,738,259 | 21,847,092 | 2,757,935,713 | 126.2 | 88.96% | 75.63% |
 F2A | ACTGC | 29,997,130 | 4,454,521,671 | 26,462,942 | 3,348,677,805 | 126.5 | 88.22% | 75.17% |
 F9A | AGAGT | 18,726,918 | 2,780,858,197 | 16,501,732 | 2,088,286,211 | 126.5 | 88.12% | 75.10% |
 F1C | ACGTA | 23,229,362 | 3,449,530,993 | 19,460,818 | 2,596,836,132 | 133.4 | 83.78% | 75.28% |
 F2C | ACTGC | 9,141,424 | 1,357,421,834 | 6,843,196 | 907,264,996 | 132.6 | 74.86% | 66.84% |
 F3C | AGAGT | 31,790,388 | 4,720,690,658 | 26,567,472 | 3,549,305,187 | 133.6 | 83.57% | 75.19% |
 F5C | ACCAT | 34,198,658 | 5,078,387,213 | 28,275,808 | 3,771,444,128 | 133.4 | 82.68% | 74.26% |
 F6C | ACGTA | 4,878,130 | 724,383,091 | 3,886,802 | 518,537,398 | 133.4 | 79.68% | 71.58% |
 F8C | ACTGC | 19,956,292 | 2,963,456,904 | 16,356,092 | 2,192,594,425 | 134.1 | 81.96% | 73.99% |
 F9C | AGAGT | 8,210,240 | 1,219,076,028 | 6,687,572 | 896,711,413 | 134.1 | 81.45% | 73.56% |
 Subtotal | – | 204,685,780 | 30,395,064,848 | 172,889,526 | 22,627,593,408 | – | – | – |
 Subaverage | – | 20,468,578 | 3,039,506,485 | 17,288,953 | 2,262,759,341 | 131.4 | 83.33% | 73.66% |
Male | ||||||||
 M1A | ACCAT | 13,510,792 | 2,006,303,898 | 11,718,538 | 1,480,652,251 | 126.4 | 86.73% | 73.80% |
 M3A | ACGTA | 4,760,476 | 706,930,686 | 3,924,978 | 515,736,898 | 131.4 | 82.45% | 72.95% |
 M5A | ACTGC | 9,174,030 | 1,362,343,455 | 7,514,458 | 990,015,495 | 131.7 | 81.91% | 72.67% |
 M6A | AGAGT | 11,568,106 | 1,717,863,741 | 9,898,912 | 1,304,979,357 | 131.8 | 85.57% | 75.97% |
 M8A | ACCAT | 12,354,600 | 1,834,658,100 | 10,442,804 | 1,378,972,481 | 132.1 | 84.53% | 75.16% |
 M2C | ACCAT | 10,770,088 | 1,599,284,962 | 8,790,688 | 1,178,460,368 | 134.1 | 81.62% | 73.69% |
 M3C | ACGTA | 30,743,266 | 4,565,350,471 | 27,115,768 | 3,471,064,019 | 128.0 | 88.20% | 76.03% |
 M4C | ACTGC | 19,284,772 | 2,863,734,056 | 16,257,120 | 2,114,310,426 | 130.1 | 84.30% | 73.83% |
 M6C | AGAGT | 6,010,814 | 892,543,605 | 4,944,440 | 640,757,057 | 129.6 | 82.26% | 71.79% |
 M7C | ACCAT | 12,737,454 | 1,891,463,037 | 10,727,510 | 1,395,530,197 | 130.1 | 84.22% | 73.78% |
 Subtotal | – | 130,914,398 | 19,440,476,011 | 111,335,216 | 14,470,478,549 | – | – | – |
 Subaverage | – | 13,091,440 | 1,944,047,601 | 11,133,522 | 1,447,047,855 | 130.5 | 84.18% | 73.97% |
 Total | – | 335,600,178 | 49,835,540,859 | 284,224,742 | 37,098,071,957 | – | – | – |
 Average | – | 16,780,009 | 2,491,777,043 | 14,211,237 | 1,854,903,598 | 131.0 | 83.75% | 73.81% |