Table 2 Repeat and Tranposable Element Content
% Total Repeat Content | 714.70 | 31671 | 31975 | 567.84 | 824.70 | 8044 |
RepeatMasker | 1.85% | 2.18% | 2.22% | 2.66% | 2.35% | 2.66% |
Repeat Scout | 3.54% | 4.07% | 4.55% | 6.67% | 5.34% | 6.67% |
NUCmer | 4.61% | 4.65% | 5.18% | 8.45% | 7.34% | 8.45% |
Combined nonredundant | 6.17% | 6.24% | 6.76% | 10.16% | 9.03% | 10.16% |
# Transposable Elements | 714.70 | 31671 | 31975 | 567 | 824 | 8044 |
RNA Transposons | ||||||
SINE | 0 | 0 | 0 | 0 | 0 | 0 |
LINE | 32 | 48 | 73 | 140 | 140 | 110 |
LTR | 83 | 73 | 67 | 94 | 94 | 92 |
 Ty1/Copia | 27 | 28 | 24 | 51 | 50 | 49 |
 Gypsy | 56 | 45 | 43 | 43 | 44 | 43 |
 DIRS | 21 | 38 | 45 | 10 | 9 | 16 |
DNA Transposons | ||||||
TIR | 48 | 48 | 65 | 123 | 91 | 185 |
 hAT | 5 | 12 | 38 | 83 | 56 | 128 |
 Tc1-IS630-Pogo | 13 | 10 | 8 | 9 | 9 | 26 |
 PiggyBac | 11 | 1 | 0 | 2 | 2 | 2 |
 Tourist/Harbinger | 0 | 1 | 1 | 1 | 1 | 1 |