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Table 4 KEGG enrichment results of differentially expressed predicted target genes in YC05–179 and ROC22 inoculated with Sporisorium scitamineum for 2 and 5 d

From: A dynamic degradome landscape on miRNAs and their predicted targets in sugarcane caused by Sporisorium scitamineum stress

Library

Kegg_pathway

ko_id

Cluter_frequency

P-value

Corrected_P-value

Enrichment_factor

DY2

Plant hormone signal transduction

ko04075

2 out of 9, 22.22%

0.071009

0.710085

0.22

Ubiquinone and other terpenoid-quinone biosynthesis

ko00130

1 out of 9, 11.11%

0.071806

0.71806

0.07

Glycerolipid metabolism

ko00561

1 out of 9, 11.11%

0.126198

1

0.13

Photosynthesis

ko00195

1 out of 9, 11.11%

0.137578

1

0.15

Arginine and proline metabolism

ko00330

1 out of 9, 11.11%

0.199175

1

0.22

Ubiquitin mediated proteolysis

ko04120

1 out of 9, 11.11%

0.213623

1

0.24

Plant-pathogen interaction

ko04626

1 out of 9, 11.11%

0.235498

1

0.26

Cysteine and methionine metabolism

ko00270

1 out of 9, 11.11%

0.236767

1

0.27

Oxidative phosphorylation

ko00190

1 out of 9, 11.11%

0.313078

1

0.37

RNA transport

ko03013

1 out of 9, 11.11%

0.371941

1

0.45

SNARE interactions in vesicular transport

ko04130

1 out of 10, 10%

0.055905

0.670858

0.06

DY5

Plant hormone signal transduction

ko04075

2 out of 10, 20%

0.085911

1

0.25

Tryptophan metabolism

ko00380

1 out of 10, 10%

0.089401

1

0.09

Pentose and glucuronate interconversions

ko00040

1 out of 10, 10%

0.092691

1

0.10

Glycerolipid metabolism

ko00561

1 out of 10, 10%

0.139209

1

0.15

Photosynthesis

ko00195

1 out of 10, 10%

0.151658

1

0.16

Fructose and mannose metabolism

ko00051

1 out of 10, 10%

0.154745

1

0.17

Peroxisome

ko04146

1 out of 10, 10%

0.201316

1

0.22

Ubiquitin mediated proteolysis

ko04120

1 out of 10, 10%

0.234362

1

0.26

Plant-pathogen interaction

ko04626

1 out of 10, 10%

0.257991

1

0.29

RNA transport

ko03013

1 out of 10, 10%

0.403603

1

0.50

Ribosome

ko03010

1 out of 10, 10%

0.544618

1

0.76

DR2

Plant hormone signal transduction

ko04075

4 out of 24, 16.67%

0.029416

0.705974

0.30

Phenylalanine, tyrosine and tryptophan biosynthesis

ko00400

2 out of 24, 8.33%

0.029491

0.707793

0.14

Photosynthesis

ko00195

2 out of 24, 8.33%

0.05751

1

0.20

Histidine metabolism

ko00340

1 out of 24, 4.17%

0.117722

1

0.12

SNARE interactions in vesicular transport

ko04130

1 out of 24, 4.17%

0.129112

1

0.14

Ubiquitin mediated proteolysis

ko04120

2 out of 24, 8.33%

0.13054

1

0.32

Cysteine and methionine metabolism

ko00270

2 out of 24, 8.33%

0.157229

1

0.35

Fatty acid biosynthesis

ko00061

1 out of 24, 4.17%

0.204988

1

0.23

Pentose and glucuronate interconversions

ko00040

1 out of 24, 4.17%

0.208438

1

0.23

Porphyrin and chlorophyll metabolism

ko00860

1 out of 24, 4.17%

0.222097

1

0.25

Ascorbate and aldarate metabolism

ko00053

1 out of 24, 4.17%

0.232192

1

0.26

Oxidative phosphorylation

ko00190

2 out of 24, 8.33%

0.256669

1

0.49

Glycine, serine and threonine metabolism

ko00260

1 out of 24, 4.17%

0.283948

1

0.33

Pentose phosphate pathway

ko00030

1 out of 24, 4.17%

0.290177

1

0.34

Fructose and mannose metabolism

ko00051

1 out of 24, 4.17%

0.332351

1

0.40

Arginine and proline metabolism

ko00330

1 out of 24, 4.17%

0.447393

1

0.58

Phagosome

ko04145

1 out of 24, 4.17%

0.454667

1

0.60

Ribosome biogenesis in eukaryotes

ko03008

1 out of 24, 4.17%

0.478256

1

0.64

Amino sugar and nucleotide sugar metabolism

ko00520

1 out of 24, 4.17%

0.478256

1

0.64

Carbon fixation in photosynthetic organisms

ko00710

1 out of 24, 4.17%

0.507463

1

0.70

Starch and sucrose metabolism

ko00500

1 out of 24, 4.17%

0.513977

1

0.71

Ribosome

ko03010

2 out of 24, 8.33%

0.551296

1

0.91

Glycolysis / Gluconeogenesis

ko00010

1 out of 24, 4.17%

0.636432

1

0.99

Protein processing in endoplasmic reticulum

ko04141

1 out of 24, 4.17%

0.67661

1

1.10

DR5

Photosynthesis

ko00195

3 out of 24, 12.5%

0.006618

0.132362

0.13

Plant hormone signal transduction

ko04075

4 out of 24, 16.67%

0.029416

0.588312

0.30

Ribosome

ko03010

4 out of 24, 16.67%

0.10279

1

0.45

Selenocompound metabolism

ko00450

1 out of 24, 4.17%

0.106189

1

0.11

Histidine metabolism

ko00340

1 out of 24, 4.17%

0.117722

1

0.12

Ubiquitin mediated proteolysis

ko04120

2 out of 24, 8.33%

0.13054

1

0.32

Cysteine and methionine metabolism

ko00270

2 out of 24, 8.33%

0.157229

1

0.35

6--Sulfur metabolism

ko00920

1 out of 24, 4.17%

0.169683

1

0.18

Ubiquinone and other terpenoid-quinone biosynthesis

ko00130

1 out of 24, 4.17%

0.180429

1

0.20

Tryptophan metabolism

ko00380

1 out of 24, 4.17%

0.201523

1

0.22

Pentose and glucuronate interconversions

ko00040

1 out of 24, 4.17%

0.208438

1

0.23

Phenylalanine, tyrosine and tryptophan biosynthesis

ko00400

1 out of 24, 4.17%

0.238852

1

0.27

Oxidative phosphorylation

ko00190

2 out of 24, 8.33%

0.256669

1

0.49

Glycine, serine and threonine metabolism

ko00260

1 out of 24, 4.17%

0.283948

1

0.33

Fructose and mannose metabolism

ko00051

1 out of 24, 4.17%

0.332351

1

0.40

Peroxisome

ko04146

1 out of 24, 4.17%

0.417358

1

0.53

Arginine and proline metabolism

ko00330

1 out of 24, 4.17%

0.447393

1

0.58

Phagosome

ko04145

1 out of 24, 4.17%

0.454667

1

0.60

Purine metabolism

ko00230

1 out of 24, 4.17%

0.644512

1

1.01

Protein processing in endoplasmic reticulum

ko04141

1 out of 24, 4.17%

0.67661

1

1.10

  1. DY2 and DY5 represent the differentially expressed predicted target genes at 2 d and 5 d after YC05–179 was inoculated with S. scitamineum, whereas DR2 and DR5 represent the differentially expressed predicted target genes at 2 d and 5 d after ROC22 was inoculated S. scitamineum. YC05–179, smut-resistant genotype; ROC22, smut-susceptible genotype
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BMC Genomics

ISSN: 1471-2164

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