Skip to main content

Table 1 Statistics of categorization and abundance of sequence reads generated from 9 cDNA libraries used for differential gene expression analysis

From: Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Sample Name Assigned reads (millions) Aligned reads (millions) Unassigned Ambiguity Unassigned Multi-mapping (millions) Unassigned No-feature (millions)
1_Control_Expt1 30.8 (60.3%) 37.0 (84.7%) 31,750 (0.1%) 14.1 (27.6%) 6.1 (12%)
2_Control_Expt2 36.3 (58.4%) 43.2 (83.4%) 37,638 (0.1%) 18.9 (30.5%) 6.8 (11%)
3_Control_Expt3 33.2 (57.8%) 39.2 (82.6%) 34,731 (0.1%) 18.6 (31.7%) 6.0 (10.5%)
4_pI_C_Expt1 24.5 (57.4%) 29.1 (83.0%) 42,708 (0.1%) 13.5 (31.8%) 4.6 (10.7%)
5_pI_C_Expt2 29.2 (62.3%) 34.4 (85.8%) 52,978 (0.1%) 12.5 (26.7%) 5.1 (10.9%)
6_pI_C_Expt3 23.0 (59.3%) 27.4 (83.9%) 41,625 (0.1%) 11.5 (29.5%) 4.3 (11.1%)
7_CpG_Expt1 27.4 (58.0%) 32.9 (83.9%) 27,411 (0.1%) 14.3 (30.3%) 5.5 (11.6%)
8_CpG_Expt2 24.8 (55.9%) 29.8 (81.7%) 25,395 (0.1%) 14.5 (32.7%) 5.0 (11.3%)
9_CpG_Expt3 27.3 (37.8%) 32.8 (69.6%) 27,623 (0.0%) 39.4 (54.6%) 5.4 (7.5%)