Table 1 Statistics of categorization and abundance of sequence reads generated from 9 cDNA libraries used for differential gene expression analysis
Sample Name | Assigned reads (millions) | Aligned reads (millions) | Unassigned Ambiguity | Unassigned Multi-mapping (millions) | Unassigned No-feature (millions) |
|---|---|---|---|---|---|
1_Control_Expt1 | 30.8 (60.3%) | 37.0 (84.7%) | 31,750 (0.1%) | 14.1 (27.6%) | 6.1 (12%) |
2_Control_Expt2 | 36.3 (58.4%) | 43.2 (83.4%) | 37,638 (0.1%) | 18.9 (30.5%) | 6.8 (11%) |
3_Control_Expt3 | 33.2 (57.8%) | 39.2 (82.6%) | 34,731 (0.1%) | 18.6 (31.7%) | 6.0 (10.5%) |
4_pI_C_Expt1 | 24.5 (57.4%) | 29.1 (83.0%) | 42,708 (0.1%) | 13.5 (31.8%) | 4.6 (10.7%) |
5_pI_C_Expt2 | 29.2 (62.3%) | 34.4 (85.8%) | 52,978 (0.1%) | 12.5 (26.7%) | 5.1 (10.9%) |
6_pI_C_Expt3 | 23.0 (59.3%) | 27.4 (83.9%) | 41,625 (0.1%) | 11.5 (29.5%) | 4.3 (11.1%) |
7_CpG_Expt1 | 27.4 (58.0%) | 32.9 (83.9%) | 27,411 (0.1%) | 14.3 (30.3%) | 5.5 (11.6%) |
8_CpG_Expt2 | 24.8 (55.9%) | 29.8 (81.7%) | 25,395 (0.1%) | 14.5 (32.7%) | 5.0 (11.3%) |
9_CpG_Expt3 | 27.3 (37.8%) | 32.8 (69.6%) | 27,623 (0.0%) | 39.4 (54.6%) | 5.4 (7.5%) |