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Table 2 Functional summary of target mRNAs of 21 differentially expressed lncRNAs in A. digitifera

From: Re-analysis of the coral Acropora digitifera transcriptome reveals a complex lncRNAs-mRNAs interaction network implicated in Symbiodinium infection

LncRNA ID Interaction relationships Uniprot Annotation of target mRNAs Functional analysis of target mRNAs by David
MSTRG.13003.1 129   lung epithelial cell differentiation; protein kinase activity; protein binding; Metabolic pathways; phosphorylation; nucleobase-containing compound metabolic process; cytoskeleton organization; GTP binding; positive regulation of protein catabolic process; GTPase activity
MSTRG.34897.1 19   protein K11-linked ubiquitination
MSTRG.35238.1 16   cytochrome-c oxidase activity; mitochondrion; mitochondrial inner membrane; mitochondrial respiratory chain complex IV; proton-transporting ATPase activity; hydrogen ion transmembrane transport
MSTRG.17668.1 10 ATP synthase subunit epsilon, mitochondrial; Maternal protein exuperantia; COP9 signalosome complex subunit 9; 60S ribosomal protein L37a; 40S ribosomal protein S29;-;-;-;-;-  
MSTRG.14204.1 9 ATP synthase subunit epsilon, mitochondrial; 60S ribosomal protein L37a; 40S ribosomal protein S29; 60S ribosomal protein L39–1;-;-;-;-;-  
MSTRG.16403.1 8 PDZ and LIM domain protein Zasp; Golgi-associated plant pathogenesis-related protein 1; WW domain-binding protein 2; Outer dense fiber protein 1;-;-;-;-  
MSTRG.39215.1 6 -;-;-;-;-;-  
MSTRG.34265.1 5 Collagen triple helix repeat-containing protein 1; Uncharacterized protein YML079W; Metallo-beta-lactamase domain-containing protein 2;-;-  
MSTRG.6940.1 5   Ribosome; structural constituent of ribosome
MSTRG.36289.1 4 V-type proton ATPase subunit e; Chitobiosyldiphosphodolichol beta-mannosyltransferase; Transcription initiation factor TFIID subunit 10;-  
MSTRG.9806.1 3 ATP synthase subunit epsilon, mitochondrial;-;-  
MSTRG.19793.1 2 -;-  
MSTRG.33259.1 2 Cilia- and flagella-associated protein 20; Protein FAM183B  
MSTRG.3737.1 2 Ubiquitin-like protein; c-Myc-binding protein  
MSTRG.7448.1 2 -; Cytochrome c oxidase subunit 6B1  
MSTRG.13804.1 1  
MSTRG.21959.1 1  
MSTRG.29713.1 1 39S ribosomal protein L15, mitochondrial  
MSTRG.32535.1 1 Protein TAR1  
MSTRG.38024.1 1 60S ribosomal protein L23  
MSTRG.4196.1 1 ATP synthase subunit delta, mitochondrial