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Table 2 Functional summary of target mRNAs of 21 differentially expressed lncRNAs in A. digitifera

From: Re-analysis of the coral Acropora digitifera transcriptome reveals a complex lncRNAs-mRNAs interaction network implicated in Symbiodinium infection

LncRNA ID

Interaction relationships

Uniprot Annotation of target mRNAs

Functional analysis of target mRNAs by David

MSTRG.13003.1

129

 

lung epithelial cell differentiation; protein kinase activity; protein binding; Metabolic pathways; phosphorylation; nucleobase-containing compound metabolic process; cytoskeleton organization; GTP binding; positive regulation of protein catabolic process; GTPase activity

MSTRG.34897.1

19

 

protein K11-linked ubiquitination

MSTRG.35238.1

16

 

cytochrome-c oxidase activity; mitochondrion; mitochondrial inner membrane; mitochondrial respiratory chain complex IV; proton-transporting ATPase activity; hydrogen ion transmembrane transport

MSTRG.17668.1

10

ATP synthase subunit epsilon, mitochondrial; Maternal protein exuperantia; COP9 signalosome complex subunit 9; 60S ribosomal protein L37a; 40S ribosomal protein S29;-;-;-;-;-

 

MSTRG.14204.1

9

ATP synthase subunit epsilon, mitochondrial; 60S ribosomal protein L37a; 40S ribosomal protein S29; 60S ribosomal protein L39–1;-;-;-;-;-

 

MSTRG.16403.1

8

PDZ and LIM domain protein Zasp; Golgi-associated plant pathogenesis-related protein 1; WW domain-binding protein 2; Outer dense fiber protein 1;-;-;-;-

 

MSTRG.39215.1

6

-;-;-;-;-;-

 

MSTRG.34265.1

5

Collagen triple helix repeat-containing protein 1; Uncharacterized protein YML079W; Metallo-beta-lactamase domain-containing protein 2;-;-

 

MSTRG.6940.1

5

 

Ribosome; structural constituent of ribosome

MSTRG.36289.1

4

V-type proton ATPase subunit e; Chitobiosyldiphosphodolichol beta-mannosyltransferase; Transcription initiation factor TFIID subunit 10;-

 

MSTRG.9806.1

3

ATP synthase subunit epsilon, mitochondrial;-;-

 

MSTRG.19793.1

2

-;-

 

MSTRG.33259.1

2

Cilia- and flagella-associated protein 20; Protein FAM183B

 

MSTRG.3737.1

2

Ubiquitin-like protein; c-Myc-binding protein

 

MSTRG.7448.1

2

-; Cytochrome c oxidase subunit 6B1

 

MSTRG.13804.1

1

–

 

MSTRG.21959.1

1

–

 

MSTRG.29713.1

1

39S ribosomal protein L15, mitochondrial

 

MSTRG.32535.1

1

Protein TAR1

 

MSTRG.38024.1

1

60S ribosomal protein L23

 

MSTRG.4196.1

1

ATP synthase subunit delta, mitochondrial

 
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BMC Genomics

ISSN: 1471-2164

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