Table 1 Summary of the RNA-seq data collected from BBR, HQR and HBR
From: Isolation of blue-green eggshell pigmentation-related genes from Putian duck through RNA-seq
Sample name | Clean read num | Read length | Adapter (%) | Low-quality (%) | Poly-A (%) | N (%) | Q20% | GC% |
|---|---|---|---|---|---|---|---|---|
BBR-1 | 70,902,122 | 150 + 150 | 52,412 (0.14%) | 261,334 (0.74%) | 0 (0%) | 538 (0%) | 97.44% | 49.81% |
BBR-2 | 68,661,202 | 44,700 (0.14%) | 234,664 (0.68%) | 0 (0%) | 523 (0%) | 97.50% | 49.09% | |
BBR-3 | 84,938,126 | 58,666 (0.14%) | 313,529 (0.74%) | 0 (0%) | 606 (0%) | 97.42% | 50.27% | |
HQR-1 | 79,938,462 | 56,120 (0.14%) | 273,612 (0.68%) | 0 (0%) | 627 (0%) | 97.51% | 49.33% | |
HQR-2 | 80,656,456 | 53,316 (0.14%) | 232,170 (0.58%) | 0 (0%) | 411 (0%) | 98.05% | 48.14% | |
HQR-3 | 83,259,050 | 48,330 (0.12%) | 286,983 (0.69%) | 0 (0%) | 367 (0%) | 97.87% | 49.56% | |
HBR-1 | 67,865,270 | 43,286 (0.12%) | 204,702 (0.6%) | 0 (0%) | 297 (0%) | 98.04% | 49.02% | |
HBR-2 | 64,378,314 | 50,400 (0.16%) | 209,061 (0.65%) | 0 (0%) | 305 (0%) | 97.94% | 49.43% | |
HBR-3 | 70,599,848 | 41,950 (0.12%) | 215,581 (0.61%) | 0 (0%) | 320 (0%) | 98.00% | 50.12% |