Table 2 Summary of clean reads and genes mapped to the reference genome from BBR, HQR and HBR
From: Isolation of blue-green eggshell pigmentation-related genes from Putian duck through RNA-seq
Sample name | Total reads | Mapping ratio | Multiple mapped | Unique mapped | Known genes | Known genes in three samples | Novel number | Total genes |
|---|---|---|---|---|---|---|---|---|
BBR-1 | 69,768,600 | 70.61% | 223,550 (0.32%) | 49,043,473 (70.29%) | 13,453 (89.26%) | 14,318 (95.00%) | 2028 | 15,481 |
BBR-2 | 67,525,768 | 71.52% | 203,606 (0.30%) | 48,092,609 (71.22%) | 13,451 (89.24%) | 1991 | 15,442 | |
BBR-3 | 83,751,552 | 71.44% | 224,984 (0.27%) | 59,607,993 (71.17%) | 13,406 (88.95%) | 2013 | 15,419 | |
HQR-1 | 78,487,372 | 70.30% | 274,946 (0.35%) | 54,903,512 (69.95%) | 13,433 (89.13%) | 2024 | 15,457 | |
HQR-2 | 79,925,764 | 72.75% | 225,898 (0.28%) | 57,921,920 (72.47%) | 13,393 (88.86%) | 2028 | 15,421 | |
HQR-3 | 81,339,600 | 69.32% | 285,570 (0.35%) | 56,101,799 (68.97%) | 13,439 (89.17%) | 2039 | 15,478 | |
HBR-1 | 67,198,854 | 68.70% | 234,618 (0.35%) | 45,927,816 (68.35%) | 13,382 (88.79%) | 1978 | 15,360 | |
HBR-2 | 63,577,054 | 71.01% | 177,168 (0.28%) | 44,968,175 (70.73%) | 13,365 (88.67%) | 1985 | 15,350 | |
HBR-3 | 69,719,704 | 70.51% | 192,410 (0.28%) | 48,964,342 (70.23%) | 13,315 (88.34%) | 1975 | 15,290 |