Table 1 Mini type I-F-carrying Tn7 R-end and L end attachment sites
From: CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species
Species/strain | Insertion locus | Right end (R) | Left end (L) | Tn7 size | Cargo genes |
|---|---|---|---|---|---|
V. cholerae | |||||
 DRAKES2103 | SRP-RNA | atctgtgtcgctgaaagcataaagtgtccaattta | cgcataggacatcttatgctttcagcgacaatctg | 27-kb | RM1 system |
 TP | SRP-RNA | tctgatgtttgcaaaataagttcgcataaattgca | gctatgcagacttatgctgcaagcatcacatctga | 35-kb | RM1 system |
 L15 | SRP-RNA | tctgatgtttgcaaaataagttcgcataaattgca |  | Short contig | RM2 system |
 HE-45 | IMPDH | acatttgttgatacaaccataaaatgataattaca | attaaatatcactttatggttgcatcaacaacatt | 36-kb | RM3 system |
V. parahaemolyticus | |||||
 RIMD2210633 | yciA | gagtttgtaaatacaaccatacattgcaacaatac | tataaatgtcactttatggttgtatcaacagagtt | 80-kb | T3SS-2α |
 BB22OP | yciA | gagtttgtaaatacaaccatacattgcaacaatac | tataaatgtcactttatggttgtatcaacagagtt | 80-kb | T3SS-2α |
 TH3996 | yciA | gagtttgtaaatacaaccatacattgcaacaatac | tataaatgtcactttatggttgtatcaacagagtt | 98-kb | T3SS-2β |
 MAVP-Q | yciA | tgagttgttgatacaaccataaaatgataattaca | tataaatatcactttatggttgtatcaacatgagt | 107-kb | T3SS-2γ |
 ISF-25-6 | IMPDH | aataatgttgaaacaaccataaattgatatttaca | tacaattatcaatttatggttgtttcaacaaataa | 35-kb | RM4 system |
 UCM-V493 | SRP-RNA | ctttatgaagcctgcaatatatgttcgcataaatt | ggactatgctaaattacgttgcaggcatcacttta | 20-kb |  |
 CFSAN007439 | SRP-RNA | ctttatgaagcctgcaatatatgttcgcataaatt | ggactatgctaaattacgttgcaggcatcacttta | 23-kb |  |
 CDC_K4762 |  | ctttatgaagcctgcaatatatgttcgcataaatt |  | Short contig | TA system |
V. navarrensis | |||||
 ATCC 51183 | SRP-RNA | gagcttgaagaacgatgctgttgttcgcactctct | tgtggcgaccaacttgccacaacccggtcagagct | 51-kb | RM system Type I-C CRISPR-Cas |