Skip to main content
Fig. 6 | BMC Genomics

Fig. 6

From: Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

Fig. 6

The number of different regulatory relationship types of lncRNA-mRNA pairs

The green and yellow columns indicated that the target protein-coding genes of lncRNAs were located within 10 kb upstream and 20 kb downstream, and had no overlap with lncRNA. The blue column indicated the overlapping of lncRNAs and their target protein-coding genes. There are five types of overlapping: mRNA (coding gene) overlap with lncRNA transcript gene, mRNA anti-overlap with lncRNA, mRNA is completely located in the exon region or intron region of the lncRNA transcript gene, and the mRNA is completely located in the reverse intron of the lncRNA transcript gene. The All three below in the figure were cis-regulation. Besides, the red column was trans-regulation that calculated based on the binding energy of lncRNAs and mRNAs.

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us