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Table 3 Summary of the pre-assembly reports for each dataset

From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

Measure % Mush -room Eel 1300a Eel 500 Eel 400 Worm 1300 Worm 620 D1 D2 D3
% of bases with Q30b 89.4 88.0 93.6 92.6 68.6 87.6 40.4 69.0 83.6
% of high-quality readsc 21.9 51.4 66.5 60.7 0.1 3.2 1.5 14.6 30.6
% of medium-quality readsd 68.5 42.0 31.4 36.9 95.0 93.7 2.4 49.5 51.6
% of poor-quality readse 9.6 6.6 2.1 2.4 4.9 3.1 96.1 35.9 17.8
  1. aThe number indicates the insert size of the specie
  2. bThe percentage of bases with quality values ≥ 30
  3. cThe percentage of reads that all of their base with Q20 & above
  4. dThe percentage of reads that are not high-quality or poor-quality
  5. eThe percentage of reads that more than 10% of their bases with Q14 or less