Table 3 Summary of the pre-assembly reports for each dataset
From: SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies
Measure % | Mush -room | Eel 1300a | Eel 500 | Eel 400 | Worm 1300 | Worm 620 | D1 | D2 | D3 |
|---|---|---|---|---|---|---|---|---|---|
% of bases with Q30b | 89.4 | 88.0 | 93.6 | 92.6 | 68.6 | 87.6 | 40.4 | 69.0 | 83.6 |
% of high-quality readsc | 21.9 | 51.4 | 66.5 | 60.7 | 0.1 | 3.2 | 1.5 | 14.6 | 30.6 |
% of medium-quality readsd | 68.5 | 42.0 | 31.4 | 36.9 | 95.0 | 93.7 | 2.4 | 49.5 | 51.6 |
% of poor-quality readse | 9.6 | 6.6 | 2.1 | 2.4 | 4.9 | 3.1 | 96.1 | 35.9 | 17.8 |