From: GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller
Throughput (GCUPS) | GPU (sec) | CPU (sec) | Speedup | |
---|---|---|---|---|
Stage 1 of S2 | 1.86 | 2.32 | 43.93 | 18.94x |
Stage 2 of S2 | - | 0.14 | 0.62 | 4.43x |
Overall of S2 | - | 3.15 | 44.55 | 14.14x |
Stage 1 of S3 | 0.64 | 10.20 | 53.29 | 5.22x |
Stage 2 of S3 | - | 0.09 | 0.17 | 1.89x |
Overall of S3 | - | 10.93 | 53.46 | 4.89x |