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Table 3 The estimated values of K given the number of SNP residues and PDT levels

From: A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side

 

N=10

20

30

40

50

60

70

80

90

100

PDT = 0

10

21

21

21

21

21

21

21

21

21

1

13

23

23

23

23

23

23

24

24

24

2

17

26

26

26

26

26

26

26

26

26

3

20

27

27

27

27

27

27

28

28

28

4

24

32

32

32

32

32

32

32

32

32

  1. PDT indicates mismatch tolerance and N indicates the panel size. The number inside of table is value of K, which is the minimal length of K-mer for the model. Usually, larger K requires longer running time and more resources. The table shows how the changes in PDT and N affect the value of K. The result indicates that K is positively correlated with both factors respectively
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BMC Genomics

ISSN: 1471-2164

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