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Table 2 Overlap detection on the real E. coli dataset

From: Improving the sensitivity of long read overlap detection using grouped short k-mer matches

 

GroupK

Minimap

Minimap2

DALIGNER

GraphMap

MHAP

Best F1 score

0.9311

0.9037

0.8426

0.8340

0.7758

0.7023

Sensitivity

0.9330

0.8939

0.8778

0.9066

0.6741

0.7258

Precision

0.9292

0.9138

0.8101

0.7722

0.9137

0.6802

  1. The performance of overlap detection using GroupK, Minimap, Minimap2, DALIGNER, MHAP, and GraphMap on the real PacBio RS II (P6-C4) E. coli dataset. Here we only report the experiment results with the highest F1 score for each tool
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BMC Genomics

ISSN: 1471-2164

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