Table 1 De novo transcriptome metrics. Metrics of quality obtained from de novo assembly during fruit development in P. Americana cv. ‘Hass’ are shown. The entire read raw data from four fruit developmental stages and three biological replicates were used for the assembly
From: De novo assembly of Persea americana cv. ‘Hass’ transcriptome during fruit development
Metric | |
|---|---|
Total Contigs | 62,203 |
Trinity “Genes” | 62,167 |
N10 (bp) | 2594 |
N30 (bp) | 1511 |
N50 (bp) | 1050 |
Largest contig length (bp) | 11,212 |
Smallest contig length (bp) | 401 |
Average contig length (bp) | 987 |
GC (%) | 41.57 |
Total nucleotides | 61,399,929 |
CEGMA Score (%) | C1: 99; F2: 1; M3: 0 |
BUSCO Score (%) | C1: 85; F2: 8; M3: 7 |
TransRate Score | 0.12/0.14 |