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Table 3 The top 30 genes with differential expression reported by the OMICfpp method using the interval score evaluated using the complete distribution

From: OMICfpp: a fuzzy approach for paired RNA-Seq counts

ENSEMBL ID

Gene symbol

Synonyms

CRC status

Other cancer

ENSG00000030304

MUSK

CMS9, FADS

Known [54]

Known [55]

ENSG00000034971

MYOC

GPOA, JOAG, TIGR, GLC1A, JOAG1

New

Known [38]

ENSG00000095752

IL11

AGIF, IL-11

Known [29]

Known [29]

ENSG00000108231

LGI1

EPT, ETL1, ADLTE, ADPAEF, ADPEAF, IB1099, EPITEMPIN

New

Known [88]

ENSG00000119147

C2orf40

ECRG4, augurin

Known [89]

Known [90]

ENSG00000125851

PCSK2

PC2, NEC2, SPC2, NEC 2, NEC-2

New

Known [91]

ENSG00000135406

PRPH

NEF4, PRPH1

Known [92]

Known [93]

ENSG00000141391

PRELID3A

C18orf43, FLJ31484, HFL-EDDG1, SLMO1

New

New

ENSG00000142959

BEST4

VMD2L2

New

New

ENSG00000144339

TMEFF2

TR, HPP1, TPEF, TR-2, TENB2, CT120.2

Known [94]

Known [95]

ENSG00000167767

KRT80

KB20

Known [96]

Known [97]

ENSG00000169764

UGP2

UDPG, UGP1, UDPGP, UGPP1, UGPP2, UDPGP2, pHC379

Known [98]

Known [99]

ENSG00000169862

CTNND2

GT24, NPRAP

New

Known [100]

ENSG00000174358

SLC6A19

HND, B0AT1

New

Known [101]

ENSG00000183034

OTOP2

-

New

New

ENSG00000196660

SLC30A10

ZNT8, ZRC1, HMDPC, ZNT10, ZnT-10, HMNDYT1, DKFZp547M236

Known [102]

Known [103]

ENSG00000211666

IGLV2-14

-

New

New

ENSG00000223260

RN7SKP194

-

New

New

ENSG00000225335

AC016027.1

-

New

New

ENSG00000227649

MTND6P32

-

New

New

ENSG00000228742

LINC02577

-

New

New

ENSG00000253233

AP005902.1

-

New

New

ENSG00000254166

PCAT2

PCA2, CARLO4, CARLo-4, TCONS00015167

New

New

ENSG00000260574

AL360157.1

-

New

New

ENSG00000261650

AC055717.2

-

New

New

ENSG00000264099

MIR4803

hsa-mir-4803

New

Known [65]

ENSG00000110887

DAO

DAAO, OXDA, DAMOX

New

Known [104]

ENSG00000134201

GSTM5

GTM5, GSTM5-5

Known [105]

Known [106]

ENSG00000162460

TMEM82

-

New

Known [107]

ENSG00000186451

SPATA12

SRG5

New

Known [108]

  1. The term “known” is assigned if the gene has been previously reported as differentially expressed in colorectal cancer (CRC) or in other types of cancer, otherwise “New” is used. The genes reported in common by OMICfpp, edgeR and DESeq2 are in bold entries