Table 1 Twenty datasets for ten cancers analyzed in this study
Cancer Type | GEO series | Platform | Normal | Cancer | # of Genes | |
|---|---|---|---|---|---|---|
LIHC | GSE57957 | GPL10558 | Illumina beadchip | 39 | 39 | 30,500 |
GSE45267 | GPL570 | Affymetrix array | 39 | 48 | 20,486 | |
KIRC | GSE46699 | GPL570 | Affymetrix array | 42 | 42 | 20,486 |
GSE53757 | GPL570 | Affymetrix array | 72 | 72 | 20,486 | |
HNSC | GSE33205 | GPL5175 | Affymetrix array | 25 | 44 | 14,963 |
GSE6631 | GPL8300 | Affymetrix array | 22 | 22 | 8592 | |
LUSC | GSE19188 | GPL570 | Affymetrix array | 65 | 27 | 20,486 |
GSE18842 | GPL570 | Affymetrix array | 32 | 32 | 20,486 | |
STAD | GSE13911 | GPL570 | Affymetrix array | 31 | 31 | 20,486 |
GSE29998 | GPL6947 | Illumina beadchip | 49 | 50 | 24,384 | |
COAD | GSE23878 | GPL570 | Affymetrix array | 24 | 35 | 20,486 |
GSE44076 | GPL13667 | Affymetrix array | 98 | 98 | 19,040 | |
LUAD | GSE27262 | GPL570 | Affymetrix array | 25 | 25 | 20,486 |
GSE87340 | GPL11154 | Illumina HiSeq | 27 | 27 | 19,471 | |
BRCA | GSE10780 | GPL570 | Affymetrix array | 70 | 30 | 20,486 |
GSE10810 | GPL570 | Affymetrix array | 27 | 31 | 20,486 | |
PAAD | GSE15471 | GPL570 | Affymetrix array | 36 | 36 | 20,486 |
GSE16515 | GPL570 | Affymetrix array | 16 | 36 | 20,486 | |
ESCA | GSE23400 | GPL96 | Affymetrix array | 53 | 53 | 12,432 |
GSE38129 | GPL571 | Affymetrix array | 30 | 30 | 12,432 | |