Table 3 The most differentially expressed specific common DEGs of the two low-regeneration lines
From: Transcriptome sequencing analysis of maize embryonic callus during early redifferentiation
GeneID | Gene description | Expression_ ratios | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ZYDH381–1 | DH3732 | 141 | DH40 | ||||||||||
I/CK | II/CK | III/CK | I/CK | II/CK | III/CK | I/CK | II/CK | III/CK | I/CK | II/CK | III/CK | ||
Zm00001d007049 | Cysteine proteinases superfamily protein | 5.33 | 5.02 | 4.56 | 8.00 | 6.03 | 4.70 | 1.80 | 0.96 | 0.91 | −0.06 | −0.45 | − 1.04 |
Zm00001d044122 | Dihydroflavonol-4-reductase | 4.17 | 6.05 | 6.16 | 5.10 | 4.54 | 4.79 | 1.22 | 2.64 | 3.07 | 2.15 | 3.75 | 3.40 |
Zm00001d024281 | Polyamine oxidase1 | 3.88 | 3.47 | 3.98 | 4.68 | 3.90 | 3.88 | 0.58 | 0.24 | 0.87 | 3.06 | 3.25 | 2.27 |
Zm00001d011461 | Putative uncharacterized protein | 3.70 | 4.09 | 5.07 | 3.74 | 5.86 | 6.02 | 0.23 | 1.72 | 1.13 | −0.34 | 0.66 | 1.32 |
Zm00001d045254 | Anthocyanidin 5,3-O-glucosyltransferase | 3.39 | 4.22 | 4.43 | 3.45 | 3.70 | 3.28 | 2.12 | 2.01 | 0.34 | 3.40 | 2.60 | 1.50 |
Zm00001d043242 | Early nodulin 20 | 3.27 | 2.65 | 3.88 | 2.25 | 4.02 | 4.73 | 0.34 | −0.43 | −0.16 | 1.88 | 1.65 | 0.40 |
Zm00001d038718 | Hemoglobin2 | 2.98 | 3.03 | 3.54 | 3.88 | 4.70 | 4.82 | 0.79 | 1.21 | 1.03 | 0.21 | 0.21 | 0.24 |
Zm00001d012231 | Amino acid permease 6 | 2.49 | 3.43 | 4.61 | 2.61 | 4.71 | 4.66 | 0.17 | −0.44 | 0.54 | 1.36 | 0.98 | 0.75 |
novel_G000032 | Opie1 putative gag protein | −4.74 | −4.74 | −4.81 | −10.44 | −10.25 | −10.40 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Zm00001d019704 | Uncharacterized protein | −3.87 | −3.89 | −3.07 | −2.34 | −2.89 | −3.05 | −2.61 | −2.66 | −2.09 | −3.60 | −3.26 | − 1.10 |
Zm00001d048693 | ATA15 protein | −3.63 | − 3.19 | − 3.37 | −3.23 | − 1.86 | − 2.05 | − 2.24 | − 1.30 | −0.95 | −2.74 | −1.09 | − 1.29 |
Zm00001d039762 | ARM repeat superfamily protein | −3.49 | − 3.51 | − 3.56 | −3.66 | − 3.47 | −1.06 | − 0.43 | −2.40 | −0.36 | − 0.90 | −1.75 | − 1.37 |
Zm00001d038049 | Lichenase-2 | −3.02 | −4.12 | − 3.88 | −6.32 | −5.18 | −5.38 | −1.25 | − 1.01 | − 0.80 | 0.49 | 1.70 | 1.03 |
Zm00001d023387 | Hypothetical protein | −2.91 | −3.16 | −3.01 | −2.83 | − 3.29 | −3.59 | −1.98 | − 3.74 | −0.37 | − 2.49 | −3.75 | −1.96 |
Zm00001d022022 | Zinc finger protein 7 | − 2.80 | −3.06 | −3.11 | − 5.51 | −4.72 | − 4.86 | 0.16 | 0.16 | 0.34 | 0.61 | 0.28 | 0.00 |