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Table 1 Glyceollin biosynthesis genes upregulated by pH 3.0 medium and downregulated by dehydration

From: The NAC family transcription factor GmNAC42–1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean

Pathway

Gene symbol

Enzyme

Wm82.a2 (Glyma 2.0)

pH 3.0 medium

Dehydration

Log2 FC

P-value

Log2 FC

P-value

Phenylpropanoid

PAL

phenylalanine ammonia-lyase

Glyma.02G309300

1.49

2.00E-05

−2.15

1.69E-10

  

Glyma.03G181700

1.31

0.01535019

−2.08

0.00169183

 

Glyma.03G181600/

1.10

0.00697352

−1.83

0.00121303

Glyma.10G058200

 

C4H

cinnamic acid 4-hydroxylase

Glyma.20G114200

4.44

1.63E-170

−1.78

0.00085225

4CL

4-coumarate: coenzyme A ligase

Glyma.11G010500

2.17

2.39E-24

−1.08

0.00147188

CHR

chalcone reductase

Glyma.14G005700

2.03

3.46E-10

−1.64

0.00053532

 

Glyma.02G307300

3.78

6.27E-25

−3.25

1.27E-07

CHI

chalcone isomerase

Glyma.10G292200

1.57

3.94E-11

−4.72

4.19E-43

 

Glyma.20G241500

1.94

4.17E-19

−1.32

0.02583103

Isoflavonoid

IFS1

Isoflavone synthase

Glyma.07G202300

1.97

1.95E-13

−2.12

6.75E-15

 

IFS2

Isoflavone synthase

Glyma.13G173500

3.23

2.16E-24

−1.11

3.40E-06

HIDH

2-hydroxy-isoflavanone dehydratase

Glyma.10G250300

1.51

2.00E-09

−1.68

1.30E-05

I2’H

isoflavone 2′-hydroxylase

Glyma.15G156100

4.32

1.43E-81

−4.08

7.32E-18

IFR

isoflavone reductase

Glyma.11G070500

2.31

1.52E-29

−4.23

1.34E-11

 

Glyma.11G070600

2.67

1.06E-60

−3.28

4.13E-18

 

Glyma.01G172600

1.55

1.52E-11

−3.15

4.23E-13

Glyma.01G172700

1.80

6.88E-13

−2.96

1.54E-20

Glyma.01G211800

2.48

9.19E-11

−2.56

1.05E-06

Glyma.11G070200

2.64

1.04E-31

−1.43

9.61E-07

Pterocarpan

PTS1

pterocarpan synthase

Glyma.19G151200

3.67

1.31E-20

−2.84

4.06E-06

  

Glyma.19G151100

3.78

1.55E-32

−1.53

0.0105246

 

Glyma.03G147700

3.75

1.34E-30

−1.70

0.00122376

P6αH

dihydroxypterocarpan- 6α-hydroxylase

Glyma.19G144700

1.71

4.51E-16

−3.79

3.21E-16

G4DT

glycinol 4-dimethylallyl-transferase

Glyma.10G295300

2.93

1.01E-19

−2.91

2.26E-10

G2DT

glycinol 2-dimethylallyl-transferase

Glyma.20G245100

2.80

5.96E-45

−3.11

3.78E-10

Methylerythritol phosphate (MEP)

DXS

1-deoxy-D-xylulose 5-phosphate synthase

Glyma.18G148700

2.73

2.90E-32

−4.63

4.62E-22

 

Glyma.08G277000

3.15

1.45E-22

−3.33

8.88E-17

  

Glyma.08G277100

2.49

1.07E-18

−3.01

5.41E-09

DXR

1-deoxy-D-xylulose 5-phosphate reductoisomerase

Glyma.16G089000

1.07

3.73E-10

−2.68

4.07E-07

 

Glyma.17G089600

1.49

6.09E-20

−2.34

2.36E-08

Glyma.05G037500

1.18

1.29E-23

−1.95

1.59E-07

CMK

4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Glyma.20G046800

1.33

1.09E-06

−2.06

1.27E-10

MDS

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Glyma.11G021400

1.10

4.90E-11

−1.46

6.26E-05

HDS

4-hydroxy-3-methylbut-2-enyl diphosphate synthase

Glyma.13G326400

1.82

9.17E-34

−1.19

1.63E-09

HDR

4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Glyma.11G120900

1.90

3.48E-25

−1.16

1.35E-10

 

Glyma.12G046000

1.22

6.42E-15

−1.09

1.61E-05

IDI2

IPP isomerase

Glyma.18G242300

1.55

8.00E-07

−1.10

1.05E-06

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BMC Genomics

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