Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

de las Heras-Saldana, Sara; Chung, Ki Yong; Lee, Seung Hwan; Gondro, Cedric

doi:10.1186/s12864-019-5530-7

BMC Genomics

Table 3 Gene Ontology of the differentially expressed genes in LD and SM muscles for days 1, 7 and 14 in relation to day 0. MF: molecular function; CC: cellular components; BP: biological process. Number of DE genes that are up-regulated (↑) and down-regulated (↓)

From: Gene expression of Hanwoo satellite cell differentiation in longissimus dorsi and semimembranosus

		Day 1		Day 7		Day 14
		Term	DE	Term	DE	Term	DE
LD	MF	Calcium ion binding	↓19	Cytoskeletal protein binding	↑7↓8	Receptor activity	↑15↓2
		Transmembrane receptor activity	↓15	Double-stranded DNA binding	↑4↓6	Cytoskeletal protein binding	↑9↓8
		Hormone activity	↑1↓7	Microtubule binding	↓7	Protein kinase binding	↑6↓5
						Peptidase inhibitor activity	↑4↓2
	CC	Extracellular space	↑ 4↓31	Cytoskeletal part	↑5↓20	Cytoskeletal part	↑7↓16
		Myofibril	↓25	Myofibril	↑12	Myofibril	↑13
		Sarcomere	↓22	Microtubule	↑12	Sarcomere	↑12
		Actin cytoskeleton	↓17	Sarcomere	↑11	Microtubule organizing center	↑1↓11
		I band	↓13	I band	↑7	I band	↑6
	BP	Regulation of multicellular organismal process	↑1↓37	Cell cycle	↑1↓33	Cell cycle	↑3↓29
		Immune system process	↑1↓27	Cytoskeleton organization	↑5↓15	Phosphorylation	↑13↓15
		Muscle structure development	↓17	Protein phosphorylation	↑6↓13	Cell proliferation	↑9↓16
		Actin filament-based process	↓14	Cell proliferation	↑5↓13	Muscle structure development	↑13↓3
		Muscle cell differentiation	↓11	Microtubule-based process	↓15	Negative regulation of proteolysis	↑6↓4
SM	MF			Cytoskeletal protein binding	↑12↓10	Receptor binding	↑15↓16
				Peptidase inhibitor activity	↑5↓4	Receptor activity	↑27↓3
				Protease binding	↑4↓2	Cytoskeletal protein binding	↑17↓12
						Peptidase inhibitor activity	↑7↓3
	CC	Contractile fiber	↓10	Cytoskeletal part	↑23↓13	Extracellular space	↑34↓13
		Sarcomere	↓9	Extracellular space	↑24↓9	Cytoskeletal part	↑18↓24
		Myofibril	↓9	Myofibril	↑20	Myofibril	↑23↓1
		Actin cytoskeleton	↓9	Sarcomere	↑18	Sarcomere	↑21↓1
		I band	↓5	Microtubule	↑1↓12	I band	↑12
	BP	Muscle structure development	↓7	Cell cycle	↑5↓34	Immune system process	↑36↓10
		Regulation of muscle system process	↓5	Cytoskeleton organization	↑10↓16	Cell cycle	↑6↓36
		Striated muscle tissue development	↓5	Inflammatory response	↑12↓3	Cell proliferation	↑15↓23
		Regulation of muscle contraction	↓4	Muscle organ development	↑12	Cytoskeleton organization	↑16↓18
				G2/M transition of mitotic cell cycle	↑1↓4	Muscle structure development	↑21↓5

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ISSN: 1471-2164

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