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Table 2 Assessment of the Greyhound validation cohort with models from two selection methods

From: Risk-modeling of dog osteosarcoma genome scans shows individuals with Mendelian-level polygenic risk are common

Method

Terms in model

Max-rescaled R2

Hosmer & Lameshow Goodness of fit test

% Correct calls

Stepwise forward selection

BICF2P1194727, BICF2P1421479, BICF2P133066, BICF2S23118341, BICF2P66597, BICF2G630418573, BICF2G63051809, BICF2G63095567, TIGRP2P331221, BICF2S23712115

0.5595

0.5390

91.0

LASSO

BICF2S23516022, TIGRP2P45171, BICF2P1194727, BICF2P1090686, BICF2P1421479, BICF2P133066, BICF2S23118341, BICF2P66597, BICF2G630418573, TIGRP2P215623, BICF2G630813090, BICF2G63051809, BICF2S23637753, BICF2S23325120, BICF2G63095567, TIGRP2P331221, BICF2S23712115

0.5921

0.0595

100