Table 1 Representative Leptospira species and strains used in the study
Species | Strain | Serovar | Species of origin | Genome status | Size (Mbp) | Number of CDS | GC% | Accession number | Abbreviated name in this study |
|---|---|---|---|---|---|---|---|---|---|
L. interrogans | CUDO5 | Paidjan | Dog | Draft | 4.94 | 4040 | 35.1 | NKYH02000001.1 | CUDO5 |
L. interrogans | CUDO8 | Dadas | Dog | Draft | 4.91 | 4013 | 35.1 | NKYG00000001.1 | CUDO8 |
L. interrogans | 56601 | Lai | Human | Complete | 4.62 | 3776 | 35.0 | NC_004342.2 | LA |
L. interrogans | Fiocruz L1–130 | Copenhageni | Human | Complete | 4.62 | 3680 | 35.0 | NC_005823.1 | LIC |
L. interrogans | LP101 | Autumnalis | Human | Draft | 5.03 | 4111 | 35.2 | NZ_AHNF02000127.1 | AUT |
L. interrogans | LT1649 | Djasiman | Human | Draft | 4.67 | 3740 | 34.9 | NZ_AFMB02000229.1 | DJAS |
L. interrogans | PigK151 | Batislava | Pig | Complete | 4.72 | 3775 | 35.0 | NZ_CP011410.1 | BTL |
L. interrogans | L1111 | Bataviae | Human | Draft | 4.85 | 3984 | 35.1 | NZ_AHND02000082.1 | BTV |
L. interrogans | Fiocruz LV133 | Canicola | Human | Draft | 4.71 | 3810 | 35.0 | NZ_AKWU02000089.1 | CAN |
L. interrogans | UI 08368 | Grippotyphosa | Human | Draft | 4.87 | 3910 | 35.0 | NZ_AHNJ02000078.1 | GRP |
L. interrogans | AKRFB | Pomona | Cattle | Draft | 4.62 | 3724 | 35.0 | NZ_LUHH01000024.1 | PMN |
L. interrogans | R168 | Pyrogenes | Human | Draft | 4.86 | 3979 | 35.2 | NZ_AHNH02000099.1 | PYR |
L. interrogans | Norma | Hardjo | Cattle | Complete | 4.76 | 3876 | 35.0 | NZ_CP012603.1 | HJ |
L. kirschneri | 3522 CT | Cynopteri | Bat | Draft | 4.40 | 3605 | 35.9 | NZ_AHMN02000024.1 | CYN |
L. noguchii | CZ 214 | Panama | Opossum | Draft | 4.71 | 4048 | 35.5 | NZ_AKWY02000035.1 | NOGU |
L. borgpetersenii | L550 | Hardjo-bovis | Human | Complete | 3.89 | 3606 | 40.2 | NC_008508.1 | LBL |
L. weilii | LNT1234 | undetermined | Human | Draft | 4.26 | 3876 | 40.4 | NZ_AHNC02000083.1 | WEIL |
L. alexanderi | L 60 | Manhao 3 | Human | Draft | 4.22 | 3994 | 40.2 | NZ_AHMT02000065.1 | ALEX |
L. alstonii | 80–412 | Pingchang | Frog | Draft | 4.59 | 4139 | 42.4 | NZ_CP015217.1 | ALS |
L. santarosai | 1342 K | Shermani | Human | Draft | 4.03 | 3600 | 41.8 | NZ_CP006694.1 | SANTA |
L. kmetyi | Bejo-Iso9 | Malaysia | Soil | Draft | 4.41 | 3994 | 44.8 | NZ_AHMP02000004.1 | KMET |
L. licerasiae | VAR010 | Varillal | Human | Draft | 4.21 | 3865 | 41.1 | NZ_AHOO02000014.1 | LINC |
L. wolffii | Khorat-H2 | Khorat | Human | Draft | 4.40 | 4036 | 45.6 | NZ_AKWX02000023.1 | WOLF |
L. biflexa | Patoc | Patoc I (Paris) | Water | Complete | 3.95 | 3687 | 38.9 | NC_010602.1 | LBF |