Table 6 ROH islands, shared by more than 50% (ROH freq.) of the Lipizzan horses from the Croatian stud farms Lipik and Đakovo and the annotated genes in corresponding regions
Chr. | Begin | End | Length (kb) | ROH freq. | Known genes |
|---|---|---|---|---|---|
4 | 58,110.547 | 58,620.749 | 510.2 | 0.529 | HOXA1, HOXA2, HOXA3, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, EVX1, HIBADH |
7 | 52,014.500 | 52,143.583 | 129.1 | 0.532 | – |
11 | 24,144.431 | 24,816.254 | 671.8 | 0.592 | COPZ2, CBX1,SNX11, HOXB1, HOXB2, HOXB3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB13, TTLL6 |
11 | 31,032.580 | 31,942.748 | 910.2 | 0.626 | C11H17orf67, DGKE, COIL, SCPEP1, AKAP1, MSI2 |
14 | 34,051.957 | 35,189.508 | 1137.5 | 0.726 | ARHGAP26, FGF1, SPRY4, NDFIP1, GNPDA1, RNF14, PCDH12, PCDH1, DELE1 |
22 | 47,901.830 | 48,624.259 | 722.4 | 0.549 | TAF4, CDH4, LSM14B, PSMA7, SS18L1, MTG2, HRH3, OSBPL2, ADRM1, LAMA5, CABLES2, RBBP8NL, GATA5, SLCO4A1, NTSR1 |