Table 7 ROH islands, shared by more than 50% (ROH freq.) of the Lipizzan horses from the Hungarian stud farms Szilvasvárad and the annotated genes in corresponding regions
Chr. | Begin | End | Length (kb) | ROH freq. | Known genes |
|---|---|---|---|---|---|
4 | 58,107.774 | 58,605.189 | 497.4 | 0.522 | HOXA1, HOXA2, HOXA3, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, EVX1 |
8 | 22,121.802 | 22,651.589 | 529.8 | 0.602 | TMEM120B, RHOF, SETD1B, HPD, PSMD9, WDR66, BCL7A, MLXIP, IL31, LRRC43, B3GNT4, DIABLO, CLIP1 |
11 | 24,134.125 | 24,833.366 | 699.2 | 0.727 | COPZ2, CBX1,SNX11, HOXB1, HOXB2, HOXB3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB13, TTLL6, CALCOCO2 |
22 | 45,518.067 | 46,096.341 | 578.3 | 0.522 | ZNF831, EDN3, PHACTR3 |
23 | 27,658.254 | 28,189.490 | 531.2 | 0.522 | UHRF2, GLDC, KDM4C |
30 | 4781.530 | 5465.214 | 683.7 | 0.522 | KIF26B, SMYD3 |