Table 1 Genes of major functional categories in each expression class
Functional category | No. of members | Expression (%) | ||||
|---|---|---|---|---|---|---|
VH [338] | H [778] | M [4475] | L [1597] | VL [409] | ||
Virulence related | 138 | 25 (7.40) | 22 (2.82) | 52 (1.16) | 28 (1.75) | 11 (2.69) |
GTPase | 444 | 10 (2.96) | 61 (7.83) | 296 (6.63) | 68 (4.26) | 9 (2.2) |
BspA family | 124 | – | 1 (0.13) | 50 (1.12) | 49 (3.07) | 24 (5.87) |
Hsps | 94 | – | 4 (0.51) | 58 (1.3) | 24 (1.5) | 8 (1.96) |
Ribosomal | 276 | 175 (51.78) | 35 (4.49) | 58 (1.3) | 4 (0.25) | 4 (0.98) |
Actin & acto-binding | 52 | 13 (3.85) | 17 (2.18) | 19 (0.43) | 2 (0.13) | 1 (0.24) |
Histone | 17 | 6 (1.78) | 3 (0.39) | 7 (0.16) | 1 (0.06) | – |
Ca & calmodulin | 52 | 3(0.89) | 15 (1.93) | 21 (0.47) | 12 (0.75) | 1 (0.24) |
LIM Zn finger | 18 | 4 (1.18) | 7 (0.9) | 6 (0.13) | – | 1 (0.24) |
Helicase | 63 | – | 4 (0.51) | 38 (0.85) | 19 (1.19) | 2 (0.49) |
Proteasomal | 35 | – | 16 (2.05) | 18 (0.4) | – | 1 (0.24) |
Ubiquitin related | 64 | 3 (0.89) | 14 (1.8) | 32 (0.72) | 14 (0.88) | 1 (0.24) |
Kinase | 432 | 4 (1.18) | 21 (2.7) | 273 (6.11) | 104 (6.51) | 30 (7.33) |