Table 2 Predicted motifs enriched in genes of different expression classes
Motif | Sequence | E-value | Width | Expression class enriched | Position of motif | Ref [12] | |
|---|---|---|---|---|---|---|---|
Motif Number | Motif similarity (significance) | ||||||
M1 | AAAARRARARAA | 2.2e-112 | 12 | All | −50 to −25 | M29 | p-value 9.06e-02 E-value 5.44e-01 |
M2 | AAAAAACCCTAD | 1.1e-050 | 12 | All | −50 to −25 | M37 | p-value 3.87e-05 E-value 2.32e-04 |
M5 | GAACTAAAAAA | 2.9e-028 | 11 | All | −25 to −01 | M40 | p-value 2.63e-05 E-value 1.58e-04 |
M4 | WGVWGBTGHTGV | 2.9e-035 | 12 | Very High | + 25 to + 75 | aM30 | p-value 6.28e-04 E-value 3.77e-03 |
M6 | TGVACCAAGAG | 2.8e-014 | 11 | Very High | + 50 to + 100 | – | – |
M10 | TYTTTTTCTTYT | 5.1e-009 | 12 | High, Medium | Dispersed | M35 | p-value 8.96e-05 E-value 5.38e-04 |
M11 | MATGKCWGVMR | 2.4e-009 | 11 | High, Medium | + 1 | – | – |
L_M3 | RAAWGAWGWWWA | 4.8e-016 | 12 | Low | Dispersed | M24 | p-value 8.18e-04 E-value 4.91e-03 |
L_M4 | TCATTCAWTS | 1.3e-020 | 10 | Low | + 1 | – | – |
L_M9 | WGATATTAATGA | 3.0e-009 | 12 | Low | + 50 | – | – |