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Table 2 Characterization of Satellite DNAs and LTR retrotransposons identified in the genome of Passiflora edulis

From: Low coverage sequencing for repetitive DNA analysis in Passiflora edulis Sims: citogenomic characterization of transposable elements and satellite DNA

Type analyse Cluster ID Reads Size (pb) Genome Proportion (%) GC (%) Classification/Localization Primers (5′ – 3′) Number acession GenBank
Based graphics CL 207 PeSat_1 128 0.01 49 Satellite Colocalised region 5S rDNA L-ATGCCTCACCCACTGTCTTT R-TGTTTAAGGCGTTTCCTTGC MF 401643
TAREAN CL 69 PeSat_2 342 0.16 59 Satellite Colocalised region 45S rDNA L-TGAGCAGTTCCACCGTGTATAG R-ATGCACTCTGCGTACTAAACCA MF 401645
CL 118 PeSat_3 145 0.06 57 Satellite Subterminal L-CAAAACGACCACTTGGGTTT R-ATCCGTGCAATAGTCACCTACG MF 401644
Protein domains tools CL 6 1086 1.32 47 Ty3/Gypsy/Chromovirus Pericentromeric regions L-GGAGCTCCAGTTTTGTTCGT R-TGTCTGCAAAACAGTCCTCAA MF 401635
CL 11 411 1.10 47 Ty3/Gypsy/Chromovirus Disperse all chromosome L-ACTGCCGCTCTCTCAGAATC R-TGGCACATTCCGGTTATGTAT MF 401636
CL 36 924 0.78 48 Ty3/Gypsy/Athila Disperse all chromosome L-CAGTATGCCTTGTGTTCGAG R-TGCATATGAGTTTGTCCTACG MF 401639
CL 43 484 0.67 45 Ty1/Copia/Angela Disperse all chromosome L-TTTCGGCTGAGTTTCAGAAG R-GTGCAGCTCAGTAGGGGATA MF 401642
CL 86 1123 0.32 33 Ty1/Copia/Maximus-Sire Disperse most chromosome L-AGCTGTGTTAACGGCTTCAG R-ACTTGGGCATGCTAGTTTTG MF 401640
CL 94 2274 0.28 35 Ty1/Copia/Maximus-Sire Disperse all chromosome L-CTTGTTGAACGGCCTAAGGA R-ATTTGGCATCCTCCATCTTG MF 401637
CL 135 946 0.11 46 Ty3/Gypsy/Athila Disperse most chromosome L-GCACTTCTCCCAGTTCAGGA R-GGCGGTATGACAGTGGTTCT MF 401638