Table 2 Characterization of Satellite DNAs and LTR retrotransposons identified in the genome of Passiflora edulis
Type analyse | Cluster ID | Reads Size (pb) | Genome Proportion (%) | GC (%) | Classification/Localization | Primers (5′ – 3′) | Number acession GenBank |
|---|---|---|---|---|---|---|---|
Based graphics | CL 207 PeSat_1 | 128 | 0.01 | 49 | Satellite Colocalised region 5S rDNA | L-ATGCCTCACCCACTGTCTTT R-TGTTTAAGGCGTTTCCTTGC | MF 401643 |
TAREAN | CL 69 PeSat_2 | 342 | 0.16 | 59 | Satellite Colocalised region 45S rDNA | L-TGAGCAGTTCCACCGTGTATAG R-ATGCACTCTGCGTACTAAACCA | MF 401645 |
CL 118 PeSat_3 | 145 | 0.06 | 57 | Satellite Subterminal | L-CAAAACGACCACTTGGGTTT R-ATCCGTGCAATAGTCACCTACG | MF 401644 | |
Protein domains tools | CL 6 | 1086 | 1.32 | 47 | Ty3/Gypsy/Chromovirus Pericentromeric regions | L-GGAGCTCCAGTTTTGTTCGT R-TGTCTGCAAAACAGTCCTCAA | MF 401635 |
CL 11 | 411 | 1.10 | 47 | Ty3/Gypsy/Chromovirus Disperse all chromosome | L-ACTGCCGCTCTCTCAGAATC R-TGGCACATTCCGGTTATGTAT | MF 401636 | |
CL 36 | 924 | 0.78 | 48 | Ty3/Gypsy/Athila Disperse all chromosome | L-CAGTATGCCTTGTGTTCGAG R-TGCATATGAGTTTGTCCTACG | MF 401639 | |
CL 43 | 484 | 0.67 | 45 | Ty1/Copia/Angela Disperse all chromosome | L-TTTCGGCTGAGTTTCAGAAG R-GTGCAGCTCAGTAGGGGATA | MF 401642 | |
CL 86 | 1123 | 0.32 | 33 | Ty1/Copia/Maximus-Sire Disperse most chromosome | L-AGCTGTGTTAACGGCTTCAG R-ACTTGGGCATGCTAGTTTTG | MF 401640 | |
CL 94 | 2274 | 0.28 | 35 | Ty1/Copia/Maximus-Sire Disperse all chromosome | L-CTTGTTGAACGGCCTAAGGA R-ATTTGGCATCCTCCATCTTG | MF 401637 | |
CL 135 | 946 | 0.11 | 46 | Ty3/Gypsy/Athila Disperse most chromosome | L-GCACTTCTCCCAGTTCAGGA R-GGCGGTATGACAGTGGTTCT | MF 401638 |