Table 1 Identification of SOD genes from B. juncea and their physico-chemical and bio-chemical properties
Gene Name | Sequence ID | Chromosome | Genomic position | Intron number | Length (aa) | MW (kDA) | pI | Predicted pfam domain | Subcellular prediction by PC |
|---|---|---|---|---|---|---|---|---|---|
BjuACSD1a | BjuA044056 | A09 | A09:53931004..53933846 (+) | 6 | 260 | 27.13 | 6.29 | CZ,RVT_3 | Cytoplasm |
BjuACSD1b | BjuA019526 | A09 | A09:54112953..54114117 (−) | 6 | 152 | 15.18 | 5.64 | CZ | Cytoplasm |
BjuBCSD1c | BjuB029125 | B04 | B04:19092172..19095235 (−) | 7 | 335 | 35.91 | 8.53 | CZ, R-L18p | Cytoplasm |
BjuBCSD1d | BjuB004106 | – | – |  | 260 | 27.13 | 6.29 | CZ, RVT_3 | Cytoplasm |
BjuACSD2a | BjuA016336 | A04 | A04:17609587..17610902 (+) | 7 | 208 | 21.46 | 6.54 | CZ | Chloroplast |
BjuACSD2b | BjuA000975 | A07 | A07:20085852..20088762 (+) | 8 | 399 | 43.42 | 5.04 | CZ, HLH | Nucleus |
BjuACSD3 | BjuA039051 | A10 | A10:14039402..14040884 (−) | 3 | 108 | 11.21 | 6.11 | CZ | Peroxisome |
BjuACSD4 | BjuA031027 | A08 | A08:24172096..24173536 (+) | 5 | 317 | 33.75 | 6.35 | CZ, HMA | Cytoplasm |
BjuACSD5 | BjuA033232 | A09 | A09:10507338..10508161 (−) | 2 | 219 | 23.62 | 6.82 | CZ | Cytoplasm |
BjuACSD6 | BjuA036999 | A09 | A09:52756456..52757949 (+) | 5 | 319 | 33.65 | 5.41 | CZ, HMA | Cytoplasm |
BjuBCSD7 | BjuB048313 | B02 | B02:34694766..34697823 (+) | 9 | 538 | 58.42 | 5.72 | CZ, HMA | Chloroplast |
BjuBCSD8 | BjuB033224 | B03 | B03:2138821..2140379 (−) | 4 | 308 | 32.62 | 6.21 | CZ, HMA | Cytoplasm |
BjuAMSD1a | BjuA033927 | A01 | A01:37574252..37575325 (−) | 4 | 163 | 17.92 | 7.01 | IMA, IMC | Mitochondrion |
BjuAMSD1b | BjuA020544 | A05 | A05:28269085..28270372 (+) | 5 | 231 | 25.41 | 8.47 | IMA, IMC | Mitochondrion |
BjuAMSD1c | BjuA035793 | A09 | A09:45173051..45179490 (−) | 3 | 310 | 34.52 | 9.57 | IMA, IMC, R-S26e | Mitochondrion |
BjuAMSD1d | BjuA037317 | A10 | A10:711262..722525 (−) | 7 | 323 | 35.03 | 5.02 | IMC, GSHPx, Gar1 | None |
BjuBMSD1e | BjuB024110 | B01 | B01:22343773..22344375 (−) | 1 | 84 | 8.79 | 6.55 | – | Mitochondrion |
BjuBMSD1f | BjuB023608 | B01 | B01:42834958..42836295 (−) | 4 | 161 | 17.65 | 6.36 | IMA, IMC | Mitochondrion |
BjuBMSD1g | BjuB006884 | B07 | B07:3015680..3017012 (+) | 5 | 231 | 25.51 | 8.46 | IMA, IMC | Mitochondrion |
BjuAFSD1a | BjuA004236 | A01 | A01:9464296..9465978 (−) | 6 | 212 | 23.84 | 5.97 | IMA, IMC | Chloroplast |
BjuBFSD1b | BjuB014294 | – | – |  | 646 | 70.89 | 5.84 | IMA, IMC | none |
BjuAFSD2a | BjuA010212 | A03 | A03:8427338..8429115 (+) | 8 | 295 | 33.86 | 4.91 | IMA, IMC | Chloroplast |
BjuBFSD2b | BjuB035345 | B02 | B02:19080775..19081998 (−) | 3 | 174 | 19.78 | 4.36 | IMC, GSHPx, Gar1 | Chloroplast |
BjuBFSD2c | BjuB015833 | B08 | B08:16094351..16096146 (+) | 8 | 298 | 33.79 | 4.86 | IMA, IMC | Chloroplast |
BjuAFSD3a | BjuA023484 | A06 | A06:20407619..20409162 (+) | 7 | 233 | 26.77 | 5.98 | IMA, IMC | Chloroplast |
BjuAFSD3b | BjuA032504 | A09 | A09:5297572..5299258 (+) | 6 | 233 | 26.78 | 5.88 | IMA, IMC | Chloroplast |
BjuAFSD3c | BjuA032067 | – |  |  | 258 | 29.72 | 8.39 | IMA, IMC | Chloroplast |
BjuAFSD3d | BjuA023518 | – |  |  | 240 | 27.7 | 6.45 | IMA, IMC | Chloroplast |
BjuBFSD3e | BjuB044804 | B02 | B02:60867392..60868959 (+) | 5 | 240 | 27.69 | 6.45 | IMA, IMC | Chloroplast |