Table 3 Single nucleotide polymorphism (SNP) markers associated with resistance P3.4.0, A2.6.0, S10.2 and K5.1 isolates, revealed by GLM + PCA analysis according p-value
From: SNPs associated with barley resistance to isolates of Pyrenophora teres f. teres
Isolate | p-value | Marker | chr | Position | cM | Allele | Minor Allele | SNP associated with resistance |
|---|---|---|---|---|---|---|---|---|
P3.4.0 | 3.24e-8 | SCRI_RS_239642a | 6H | 357492232 | 55.4 | A/G | A(0.22) | A(0.83) |
P3.4.0 | 4.84e-8 | SCRI_RS_224389a | 6H | 360336381 | 55.4 | C/T | C(0.22) | C(0.83) |
P3.4.0 | 7.42E-06 | JHI-Hv50k-2016-104859b | 2H | 639342580 | 71-74.1 | A/G | G(0.18) | A(0.50) |
P3.4.0 | 1.44E-05 | BOPA2_12_31445b | 2H | 639288665 | 71-74.1 | A/G | G(0.20) | A(0.50) |
A2.6.0 | 2.08E-06 | JHI-Hv50k-2016-169338c | 3H | 213632124 | 50.9-52.6 | A/G | G(0.40) | G(0.92) |
A2.6.0 | 5.96E-06 | SCRI_RS_186341c | 3H | NA | 51.2 | G/A | A(0.40) | A(0.92) |
S10.2 | 2.20E-06 | JHI-Hv50k-2016-392656c | 6H | 153234073 | 52.6–53.8 | C/T | C(0.48) | T(0.86) |
S10.2 | 2.38E-06 | JHI-Hv50k-2016-391875c | 6H | 142513704 | A/C | A(0.30) | C(1) | |
S10.2 | 2.38E-06 | BOPA2_12_30021c | 6H | 156957594 | A/G | A(0.30) | G(1) | |
K5.1 | 2.84E-05 | JHI-Hv50k-2016-215624c | 3H | 668951958 | 135.6-137-5 | A/C | C(0.11) | A(1) |
K5.1 | 3.14E-05 | SCRI_RS_239642c | 6H | 357492232 | 55.4 | A/G | A(0.22) | A(0.55) |