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Table 1 Information on the results of RNA-Seq data quality control and mapping

From: Integrated analysis of lncRNA and mRNA repertoires in Marek’s disease infected spleens identifies genes relevant to resistance

Sample ID Raw reads Clean reads Read length Mapped reads Concordantly mapped pairs Concordant pair align rate (%) Overall alignment rate (%) Depth of coverage Coverage
s17–1 108,038,362 107,236,056 150 99,071,070 47,355,310 88.32 92.39 71.44 99 M
s17–2 104,641,540 104,150,474 150 95,831,146 45,554,825 87.48 92.01 69.72 96 M
s14–5 104,552,356 104,012,122 150 96,002,848 45,706,899 87.89 92.3 59.93 96 M
s21–5 115,513,772 114,724,610 150 105,871,206 50,359,014 87.79 92.28 71.65 106 M
s12–1 121,782,278 121,124,168 150 111,411,790 53,080,305 87.65 91.98 72.78 111 M
s10–4 95,689,198 94,726,246 150 84,233,771 39,193,992 82.75 88.92 51.00 84 M
s13–2 102,265,142 100,720,338 150 89,382,799 41,657,926 82.72 88.74 59.45 89 M
s14–8 92,679,650 91,878,888 150 81,576,308 38,013,902 82.75 88.79 43.88 81 M
s16–2 100,808,994 100,163,884 150 92,596,205 44,222,526 88.3 92.44 60.53 93 M
s6–3 106,793,466 105,995,894 150 94,836,775 44,425,877 83.83 89.47 71.91 95 M
s7–2 117,484,294 116,319,496 150 98,372,279 45,819,569 78.78 84.57 66.10 98 M
s9–2 101,533,692 100,601,162 150 87,682,429 40,550,892 80.62 87.16 51.14 88 M
s24–11 108,771,468 108,057,900 150 100,009,407 47,516,011 87.95 92.55 54.06 100 M
s24–6 117,780,440 117,111,392 150 107,874,786 51,288,711 87.59 92.11 54.88 108 M
s24–7 125,499,128 124,725,286 150 114,662,567 54,498,218 87.39 91.93 72.64 115 M
s24–8 112,133,382 111,530,648 150 103,004,010 49,103,238 88.05 92.35 70.26 103 M
s24–9 100,700,518 100,087,486 150 92,311,210 43,884,783 87.69 92.23 55.25 92 M