Sample ID | Raw reads | Clean reads | Read length | Mapped reads | Concordantly mapped pairs | Concordant pair align rate (%) | Overall alignment rate (%) | Depth of coverage | Coverage |
---|---|---|---|---|---|---|---|---|---|
s17–1 | 108,038,362 | 107,236,056 | 150 | 99,071,070 | 47,355,310 | 88.32 | 92.39 | 71.44 | 99 M |
s17–2 | 104,641,540 | 104,150,474 | 150 | 95,831,146 | 45,554,825 | 87.48 | 92.01 | 69.72 | 96 M |
s14–5 | 104,552,356 | 104,012,122 | 150 | 96,002,848 | 45,706,899 | 87.89 | 92.3 | 59.93 | 96 M |
s21–5 | 115,513,772 | 114,724,610 | 150 | 105,871,206 | 50,359,014 | 87.79 | 92.28 | 71.65 | 106 M |
s12–1 | 121,782,278 | 121,124,168 | 150 | 111,411,790 | 53,080,305 | 87.65 | 91.98 | 72.78 | 111 M |
s10–4 | 95,689,198 | 94,726,246 | 150 | 84,233,771 | 39,193,992 | 82.75 | 88.92 | 51.00 | 84 M |
s13–2 | 102,265,142 | 100,720,338 | 150 | 89,382,799 | 41,657,926 | 82.72 | 88.74 | 59.45 | 89 M |
s14–8 | 92,679,650 | 91,878,888 | 150 | 81,576,308 | 38,013,902 | 82.75 | 88.79 | 43.88 | 81 M |
s16–2 | 100,808,994 | 100,163,884 | 150 | 92,596,205 | 44,222,526 | 88.3 | 92.44 | 60.53 | 93 M |
s6–3 | 106,793,466 | 105,995,894 | 150 | 94,836,775 | 44,425,877 | 83.83 | 89.47 | 71.91 | 95 M |
s7–2 | 117,484,294 | 116,319,496 | 150 | 98,372,279 | 45,819,569 | 78.78 | 84.57 | 66.10 | 98 M |
s9–2 | 101,533,692 | 100,601,162 | 150 | 87,682,429 | 40,550,892 | 80.62 | 87.16 | 51.14 | 88 M |
s24–11 | 108,771,468 | 108,057,900 | 150 | 100,009,407 | 47,516,011 | 87.95 | 92.55 | 54.06 | 100 M |
s24–6 | 117,780,440 | 117,111,392 | 150 | 107,874,786 | 51,288,711 | 87.59 | 92.11 | 54.88 | 108 M |
s24–7 | 125,499,128 | 124,725,286 | 150 | 114,662,567 | 54,498,218 | 87.39 | 91.93 | 72.64 | 115 M |
s24–8 | 112,133,382 | 111,530,648 | 150 | 103,004,010 | 49,103,238 | 88.05 | 92.35 | 70.26 | 103 M |
s24–9 | 100,700,518 | 100,087,486 | 150 | 92,311,210 | 43,884,783 | 87.69 | 92.23 | 55.25 | 92 M |