Integrated analysis of lncRNA and mRNA repertoires in Marek’s disease infected spleens identifies genes relevant to resistance

Table 1 Information on the results of RNA-Seq data quality control and mapping

Sample ID	Raw reads	Clean reads	Read length	Mapped reads	Concordantly mapped pairs	Concordant pair align rate (%)	Overall alignment rate (%)	Depth of coverage	Coverage
s17–1	108,038,362	107,236,056	150	99,071,070	47,355,310	88.32	92.39	71.44	99 M
s17–2	104,641,540	104,150,474	150	95,831,146	45,554,825	87.48	92.01	69.72	96 M
s14–5	104,552,356	104,012,122	150	96,002,848	45,706,899	87.89	92.3	59.93	96 M
s21–5	115,513,772	114,724,610	150	105,871,206	50,359,014	87.79	92.28	71.65	106 M
s12–1	121,782,278	121,124,168	150	111,411,790	53,080,305	87.65	91.98	72.78	111 M
s10–4	95,689,198	94,726,246	150	84,233,771	39,193,992	82.75	88.92	51.00	84 M
s13–2	102,265,142	100,720,338	150	89,382,799	41,657,926	82.72	88.74	59.45	89 M
s14–8	92,679,650	91,878,888	150	81,576,308	38,013,902	82.75	88.79	43.88	81 M
s16–2	100,808,994	100,163,884	150	92,596,205	44,222,526	88.3	92.44	60.53	93 M
s6–3	106,793,466	105,995,894	150	94,836,775	44,425,877	83.83	89.47	71.91	95 M
s7–2	117,484,294	116,319,496	150	98,372,279	45,819,569	78.78	84.57	66.10	98 M
s9–2	101,533,692	100,601,162	150	87,682,429	40,550,892	80.62	87.16	51.14	88 M
s24–11	108,771,468	108,057,900	150	100,009,407	47,516,011	87.95	92.55	54.06	100 M
s24–6	117,780,440	117,111,392	150	107,874,786	51,288,711	87.59	92.11	54.88	108 M
s24–7	125,499,128	124,725,286	150	114,662,567	54,498,218	87.39	91.93	72.64	115 M
s24–8	112,133,382	111,530,648	150	103,004,010	49,103,238	88.05	92.35	70.26	103 M
s24–9	100,700,518	100,087,486	150	92,311,210	43,884,783	87.69	92.23	55.25	92 M

ISSN: 1471-2164