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Table 3 Overview of the gene differences among the top eight serotypes investigated

From: Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

Serotype

Strains (n)

wgMLST genes shared

Total number of different genes1

Average number of different genes per isolate

Average distance within a serotype

O63:H6

80

4092

1333

16.7

78.8

O113:H6

25

4126

358

14.3

62.1

O125:H6

28

4026

308

11.0

33.4

O132:H34

7

4031

167

23.9

52.9

O145:H34

19

4016

502

26.4

78.0

O4:H2

4

3793

545

136.3

303.7

O45:H2

15

3793

519

34.6

117.2

O128:H2

13

3851

1097

84.4

361.0

  1. Note: 1 Identical genes among a serotype were excluded