Skip to main content

Table 1 The distribution of CpG sites with known methylation status in different cells on the HCCs dataset

From: LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data

Chr N N 1 P1(%) N 2 P2(%) N 3 P3(%)
1 245976 145401 59.11 39278 15.97 1571 0.64
2 161199 87074 54.02 20338 12.62 980 0.61
3 110750 61484 55.52 14919 13.47 736 0.66
4 79228 34884 44.03 6879 8.68 407 0.51
5 102061 53635 52.55 10876 10.66 526 0.52
6 118936 67662 56.89 15998 13.45 748 0.63
7 168052 105917 63.03 32047 19.07 1318 0.78
8 99288 56661 57.07 13249 13.34 572 0.58
9 129180 77692 60.14 22570 17.47 1010 0.78
10 105721 56237 53.19 13081 12.37 542 0.51
11 124461 70626 56.75 17566 14.11 749 0.6
12 96267 49025 50.93 12301 12.78 625 0.65
Total 1541119 866298 56.21 219102 14.22 9784 0.63
  1. 1Chr represents the chromosome ID
  2. 2N represents the total number of known CpG sites
  3. 3 N1 represents the number of sites at the same position at least in two cells
  4. 4 P1(%) represents the proportion of N1 in all sites
  5. 5 N2 represents the number of sites with same states at the same position in at least two cells
  6. 6 P2(%) represents the proportion of N2 in all sites
  7. 7 N3 represents the number of sites with the same states in specific sites where methylation state was known
  8. 8 P3(%) represents the proportion of N3 in all sites