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Table 3 Genome annotation of bacteriophage DLP4

From: Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion

Gene Coding region Length (AA) Strand Start codon Putative function BLASTp hit Query coverage E value Identity Accession
1 5–1135 377 + ATG hypothetical protein virion structural protein [Pseudomonas phage AAT-1] 94% 3.00E-13 62% AME18051.1
2 1117–2799 561 + ATG serine--glyoxylate aminotransferase putative virion structural protein [Pseudomonas phage PaMx74] 95% 0 63% YP_009199471.1
3 2799–3611 271 + ATG FAD/FMN dehydrogenase putative virion structural protein [Pseudomonas phage PaMx74] 100% 7.00E-151 73% YP_009199472.1
4 3624–3857 78 + ATG virion structural protein putative virion structural protein [Pseudomonas phage PaMx74] 98% 1.00E-39 83% YP_009199473.1
5 3854–4057 68 + GTG hypothetical protein hypothetical protein PaMx74_35 [Pseudomonas phage PaMx74] 98% 7.00E-23 64% YP_009199474.1
6 4044–6359 772 + ATG virion structural protein putative virion structural protein [Pseudomonas phage PaMx74] 97% 0 58% YP_009199475.1
7 6359–7138 260 + ATG tail assembly protein tail assembly protein [Xylella phage Salvo] 100% 2.00E-82 51% AHB12242.1
8 7142–7306 55 + ATG tail assembly protein tail assembly protein [Xylella phage Sano] 98% 1.00E-04 37% AHB12066.1
9 7316–8260 315 + ATG tail assembly protein tail assembly protein [Xylella phage Salvo] 99% 1.00E-90 51% AHB12240.1
10 8263–9546 428 + GTG hypothetical protein tail fiber protein [Xylella phage Salvo] 24% 7.00E-12 41% AHB12239.1
11 9543–9848 102 + GTG hypothetical protein hypothetical protein AAT1_02032 [Pseudomonas phage AAT-1] 98% 7.00E-39 64% AME18058.1
12 9845–10,339 165 + ATG endolysin putative endolysin [Pseudomonas phage PaMx74] 99% 3.00E-92 83% YP_009199477.1
13 10,350–10,826 159 + ATG i-spanin virion structural protein [Pseudomonas phage PaMx28] 100% 8.00E-59 63% YP_009210650.1
14 10,639–11,013 125 + GTG o-spanin putative o-spanin [Pseudomonas phage AAT-1] 96% 2.00E-51 68% ANN44564.1
15 11,010–11,285 92 + GTG hypothetical membrane protein putative membrane protein [Pseudomonas phage PaMx74] 98% 2.00E-37 67% YP_009199480.1
16 11,417–11,593 59 ATG hypothetical protein hypothetical protein PaMx74_42 [Pseudomonas phage PaMx74] 98% 4.00E-04 40% YP_009199481.1
17 11,661–11,891 77 ATG hypothetical protein hypothetical protein PaMx74_43 [Pseudomonas phage PaMx74] 67% 3.00E-14 63% YP_009199482.1
18 11,918–12,202 95 ATG hypothetical protein hypothetical protein AAT1_02038 [Pseudomonas phage AAT-1] 90% 4.00E-04 37% AME18064.1
19 12,186–12,491 102 ATG HIRAN domain protein putative HIRAN domain-containing protein [Pseudomonas phage PaMx28] 92% 2.00E-27 57% YP_009210657.1
20 12,491–13,048 186 ATG hypothetical protein hypothetical protein PaMx74_46 [Pseudomonas phage PaMx74] 98% 5.00E-58 60% YP_009199485.1
21 13,171–13,839 223 ATG hypothetical protein hypothetical protein PaMx74_47 [Pseudomonas phage PaMx74] 98% 7.00E-62 50% YP_009199486.1
22 14,040–14,264 75 ATG hypothetical protein hypothetical protein PaMx74_48 [Pseudomonas phage PaMx74] 85% 7.00E-25 76% YP_009199487.1
23 14,386–14,832 149 GTG hypothetical protein hypothetical protein PaMx74_49 [Pseudomonas phage PaMx74] 94% 3.00E-70 75% YP_009199488.1
24 14,817–15,305 163 ATG FolA/DHFR putative dihydrofolate reductase [Pseudomonas phage PaMx74] 100% 3.00E-59 61% YP_009199489.1
25 15,290–15,766 159 ATG deoxycytidylate deaminase putative dCMP deaminase [Pseudomonas phage PaMx74] 92% 6.00E-70 70% YP_009199490.1
26 15,766–16,707 314 GTG thymidylate synthase thymidylate synthase [Pseudomonas phage AAT-1] 98% 1.00E-161 71% AME18072.1
27 16,704–17,477 258 ATG nucleotide pyrophosphohydrolase putative nucleotide pyrophosphohydrolase [Pseudomonas phage AAT-1] 89% 3.00E-106 63% AME18073.1
28 17,553–17,783 77 ATG hypothetical protein      
29 17,786–18,805 340 ATG hypothetical protein hypothetical protein PaMx28_55 [Pseudomonas phage PaMx28] 97% 0 74% YP_009210667.1
30 18,920–19,384 155 ATG hypothetical protein hypothetical protein PaMx28_56 [Pseudomonas phage PaMx28] 61% 2.00E-42 78% YP_009210668.1
31 19,526–21,004 493 GTG helicase putative helicase [Pseudomonas phage PaMx74] 99% 0 80% YP_009199496.1
32 21,001–23,376 792 ATG DNA polymerase putative DNA polymerase [Pseudomonas phage PaMx74] 90% 0 77% YP_009199498.1
33 23,405–23,851 149 GTG hypothetical protein hypothetical protein AAT1_02054 [Pseudomonas phage AAT-1] 100% 6.00E-60 57% AME18080.1
34 23,848–24,237 130 TTG hypothetical protein hypothetical protein PaMx74_61 [Pseudomonas phage PaMx74] 99% 3.00E-60 75% YP_009199500.1
35 24,234–24,578 115 ATG hypothetical protein hypothetical protein PaMx74_63 [Pseudomonas phage PaMx74] 93% 2.00E-54 75% YP_009199502.1
36 24,575–25,258 228 ATG hypothetical protein hypothetical protein PaMx74_65 [Pseudomonas phage PaMx74] 99% 1.00E-89 56% YP_009199504.1
37 25,248–25,448 67 GTG hypothetical protein hypothetical protein PaMx74_66 [Pseudomonas phage PaMx74] 93% 8.00E-19 58% YP_009199505.1
38 25,445–25,672 76 ATG hypothetical protein      
39 25,793–26,404 204 ATG DNA binding protein putative DNA binding protein [Pseudomonas phage PaMx28] 99% 2.00E-108 78% YP_009210678.1
40 26,538–27,317 260 ATG hypothetical protein hypothetical protein PaMx28_69 [Pseudomonas phage PaMx28] 77% 1.00E-76 59% YP_009210681.1
41 27,390–28,868 493 ATG Cas4 nuclease PD-(D/E) XK nuclease superfamily protein 99% 0 72% YP_009210682.1
42 28,918–29,181 88 ATG hypothetical protein hypothetical protein PaMx74_72 [Pseudomonas phage PaMx74] 95% 5.00E-43 81% YP_009199511.1
43 29,178–29,702 175 ATG hypothetical protein hypothetical protein PaMx28_72 [Pseudomonas phage PaMx28] 98% 6.00E-23 43% YP_009210684.1
44 29,904–30,074 57 + ATG hypothetical protein hypothetical protein PaMx74_74 [Pseudomonas phage PaMx74] 89% 6.00E-16 72% YP_009199513.1
45 30,071–32,392 774 + GTG primase putative primase/polymerase [Pseudomonas phage PaMx74] 99% 0 85% YP_009199514.1
46 33,021–33,638 206 + GTG small terminase terminase large subunit [Pseudomonas phage AAT-1] 95% 9.00E-108 77% AME18098.1
47 33,701–33,919 73 + ATG hypothetical protein      
48 33,929–34,171 81 + ATG hypothetical protein hypothetical protein PaMx74_02 [Pseudomonas phage PaMx74] 93% 1.00E-27 67% YP_009199441.1
49 34,168–34,362 65 + ATG deoxynucleoside monophosphate kinase hypothetical protein [Lysobacter sp. Root667] 78% 1.00E-08 56% WP_056102216.1
50 34,359–34,577 73 + ATG hypothetical protein hypothetical protein [Lysobacter capsici] 76% 2.00E-06 47% WP_057921118.1
51 34,581–35,045 155 + GTG RNA Pseudouradine synthase      
52 35,045–36,514 490 + ATG large terminase putative terminase large subunit [Pseudomonas phage PaMx74] 100% 0 80% YP_009199443.1
53 37,156–37,560 135 + ATG hypothetical protein hypothetical protein PaMx74_06 [Pseudomonas phage PaMx74] 98% 6.00E-07 34% YP_009199445.1
54 37,557–37,991 145 + ATG hypothetical protein      1
55 38,200–40,020 607 + ATG nrdA nrdA [uncultured Mediterranean phage uvMED] 97% 0 51% BAQ94146.1
56 40,028–41,020 547 + ATG nrdB nrdB [uncultured Mediterranean phage uvMED] 94% 5.00E-126 54% BAR25383.1
57 41,131–42,771 331 + ATG hypothetical protein hypothetical protein PaMx74_08 [Pseudomonas phage PaMx74] 99% 4.00E-169 51% YP_009199447.1
58 42,840–43,274 145 + ATG hypothetical protein hypothetical protein PaMx74_10 [Pseudomonas phage PaMx74] 81% 1.00E-06 40% YP_009199449.1
59 43,271–44,059 263 + GTG polynucleotide kinase hypothetical protein [Mitsuaria chitosanitabida] 58% 3.00E-38 46% WP_067070380.1
60 44,059–44,955 299 + ATG DNA ligase putative DNA ligase [Pseudomonas phage PaMx74] 97% 2.00E-106 57% YP_009199450.1
61 45,042–46,562 507 + ATG portal protein structural protein [Pseudomonas phage AAT-1] 94% 0 78% AME18030.1
62 46,562–50,131 1190 + ATG minor head protein morphogenesis protein [Pseudomonas phage PaMx28] 100% 0 75% YP_009210622.1
63 50,133–50,405 91 + ATG hypothetical protein hypothetical protein PaMx28_11 [Pseudomonas phage PaMx28] 95% 1.00E-42 80% YP_009210623.1
64 50,549–51,334 262 + ATG virion structural protein virion structural protein [Pseudomonas phage AAT-1] 98% 8.00E-146 78% AME18033.1
65 51,384–51,869 162 GTG YbiA putative YbiA-like protein [Pseudomonas phage PaMx28] 98% 2.00E-81 72% YP_009210625.1
66 51,909–52,817 303 ATG hypothetical protein hypothetical protein PaMx74_15 [Pseudomonas phage PaMx74] 99% 3.00E-70 47% YP_009199454.1
67 52,903–53,280 126 ATG hypothetical protein hypothetical protein AAT1_02012 [Pseudomonas phage AAT-1] 73% 2.00E-19 49% AME18037.1
68 53,292–53,621 110 ATG hypothetical protein hypothetical protein [Enterobacteriaceae] 65% 0.034 35% WP_044347588.1
69 53,636–53,848 71 ATG hypothetical protein hypothetical protein AAT1_02013 [Pseudomonas phage AAT-1] 80% 9.00E-20 71% AME18038.1
70 53,856–54,095 80 ATG hypothetical protein      
71 54,657–55,589 311 + ATG major head protein major head protein [Pseudomonas phage PaMx28] 99% 0 87% YP_009210631.1
72 55,657–55,890 78 + ATG hypothetical protein      
73 55,957–56,568 204 + ATG hypothetical protein hypothetical protein PaMx74_20 [Pseudomonas phage PaMx74] 99% 5.00E-47 49% YP_009199459.1
74 56,591–57,115 175 + ATG virion structural protein putative virion structural protein [Pseudomonas phage PaMx74] 99% 1.00E-84 72% YP_009199461.1
75 57,117–57,485 123 + ATG virion structural protein putative virion structural protein [Pseudomonas phage PaMx74] 100% 2.00E-46 61% YP_009199462.1
76 57,487–57,879 131 + GTG virion structural protein virion structural protein [Pseudomonas phage PaMx28] 98% 5.00E-72 80% YP_009210635.1
77 57,892–58,314 141 + ATG tail terminator protein putative tail terminator protein [Pseudomonas phage PaMx74] 97% 6.00E-92 93% YP_009199464.1
78 58,337–59,278 314 + ATG major tail structural protein major tail structural protein [Pseudomonas phage AAT-1] 100% 0 80% AME18046.1
79 59,283–59,729 149 + ATG hypothetical protein hypothetical protein AAT1_02022 [Pseudomonas phage AAT-1] 89% 3.00E-54 61% AME18047.1
80 59,768–60,013 82 + ATG hypothetical protein hypothetical protein PaMx74_28 [Pseudomonas phage PaMx74] 100% 3.00E-46 90% YP_009199467.1
81 60,117–62,474 786 + ATG tape measure protein putative tail tape measure protein [Pseudomonas phage PaMx74] 99% 0 74% YP_009199468.1
82 62,490–63,944 485 + ATG tail fiber structural protein tail fiber structural protein [Pseudomonas phage MP1412] 100% 3.00E-98 39% YP_006561077.1