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Table 2 The TEs around WOX genes locus

From: Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization

Repeat Class No. of elements in B. napus No. of elements in B. rapa No. of elements in B. oleracea
Integrated Virus 6 2 4
 Caulimoviridae 6 2 4
Interspersed Repeat 1 1 0
 DNA transposon 203 96 118
  Academ 1 0 1
  Crypton 2 1 1
  Dada 1 1 2
  EnSpm/CACTA 40 18 20
  Ginger1 2 0 3
  Ginger2/TDD 1 0 0
  Harbinger 15 10 12
  Helitron 23 6 12
  IS3EU 2 2 0
  ISL2EU 0 1 0
  Kolobok 5 0 1
  Mariner/Tc1 18 7 12
  Merlin 1 1 0
  MuDR 29 15 13
  P 3 5 3
  Polinton 9 5 4
  Sola 1 1 2
   Sola2 1 1 1
   Sola3 0 0 1
  Zisupton 0 0 1
  Transib 1 1 0
  hAT 25 13 20
  piggyBac 2 1 1
 Endogenous Retrovirus 5 3 4
  ERV1 1 1 0
  ERV2 1 1 1
  ERV3 1 1 1
 LTR Retrotransposon 114 56 57
  BEL 6 2 2
  Copia 35 13 14
  DIRS 0 1 1
  Gypsy 68 37 34
 Non-LTR Retrotransposon 73 45 52
  CR1 6 4 6
  Crack 2 0 1
  Daphne 3 1 3
  I 2 0 2
  Jockey 3 1 1
  L1 23 14 18
  L2 1 0 2
  NeSL 0 2 0
  Nimb 1 1 0
  Outcast 1 1 0
  Penelope 9 5 3
  R1 1 0 0
  RTE 3 1 5
  RTEX 3 1 0
  Rex1 1 1 0
  SINE 8 5 4
   SINE2/tRNA 8 5 4
  Tad1 0 2 2
  Tx1 4 2 3
Simple Repeat 2 1 0
 Satellite 2 1 0
  SAT 2 1 0
Transposable Element 402 202 235
Total 411 206 239