Table 2 The TEs around WOX genes locus
Repeat Class | No. of elements in B. napus | No. of elements in B. rapa | No. of elements in B. oleracea |
|---|---|---|---|
Integrated Virus | 6 | 2 | 4 |
 Caulimoviridae | 6 | 2 | 4 |
Interspersed Repeat | 1 | 1 | 0 |
 DNA transposon | 203 | 96 | 118 |
  Academ | 1 | 0 | 1 |
  Crypton | 2 | 1 | 1 |
  Dada | 1 | 1 | 2 |
  EnSpm/CACTA | 40 | 18 | 20 |
  Ginger1 | 2 | 0 | 3 |
  Ginger2/TDD | 1 | 0 | 0 |
  Harbinger | 15 | 10 | 12 |
  Helitron | 23 | 6 | 12 |
  IS3EU | 2 | 2 | 0 |
  ISL2EU | 0 | 1 | 0 |
  Kolobok | 5 | 0 | 1 |
  Mariner/Tc1 | 18 | 7 | 12 |
  Merlin | 1 | 1 | 0 |
  MuDR | 29 | 15 | 13 |
  P | 3 | 5 | 3 |
  Polinton | 9 | 5 | 4 |
  Sola | 1 | 1 | 2 |
   Sola2 | 1 | 1 | 1 |
   Sola3 | 0 | 0 | 1 |
  Zisupton | 0 | 0 | 1 |
  Transib | 1 | 1 | 0 |
  hAT | 25 | 13 | 20 |
  piggyBac | 2 | 1 | 1 |
 Endogenous Retrovirus | 5 | 3 | 4 |
  ERV1 | 1 | 1 | 0 |
  ERV2 | 1 | 1 | 1 |
  ERV3 | 1 | 1 | 1 |
 LTR Retrotransposon | 114 | 56 | 57 |
  BEL | 6 | 2 | 2 |
  Copia | 35 | 13 | 14 |
  DIRS | 0 | 1 | 1 |
  Gypsy | 68 | 37 | 34 |
 Non-LTR Retrotransposon | 73 | 45 | 52 |
  CR1 | 6 | 4 | 6 |
  Crack | 2 | 0 | 1 |
  Daphne | 3 | 1 | 3 |
  I | 2 | 0 | 2 |
  Jockey | 3 | 1 | 1 |
  L1 | 23 | 14 | 18 |
  L2 | 1 | 0 | 2 |
  NeSL | 0 | 2 | 0 |
  Nimb | 1 | 1 | 0 |
  Outcast | 1 | 1 | 0 |
  Penelope | 9 | 5 | 3 |
  R1 | 1 | 0 | 0 |
  RTE | 3 | 1 | 5 |
  RTEX | 3 | 1 | 0 |
  Rex1 | 1 | 1 | 0 |
  SINE | 8 | 5 | 4 |
   SINE2/tRNA | 8 | 5 | 4 |
  Tad1 | 0 | 2 | 2 |
  Tx1 | 4 | 2 | 3 |
Simple Repeat | 2 | 1 | 0 |
 Satellite | 2 | 1 | 0 |
  SAT | 2 | 1 | 0 |
Transposable Element | 402 | 202 | 235 |
Total | 411 | 206 | 239 |