Table 3 The expression patterns of WOX gene pairs with potential direct evolutionary relationships
Clade | Gene pairs with evolutionary relationshipa | Flowers_FPKM | Leaves_FPKM | Siliques_FPKM | Stems_FPKM | Gene structureb |
|---|---|---|---|---|---|---|
Ancient clade | BoWOX14c | 0 | 0 | 0 | 0.04 | D |
BnCWOX14c | 0 | 0.14 | 0 | 0.31 | ||
BrWOX14b | 0 | 0 | 0 | 0 | S | |
BnAWOX14e | 0 | 0 | 0 | 0 | ||
BrWOX14a | 0.15 | 0.13 | 2.85 | 1.42 | S | |
BnAWOX14b | 0 | 0.87 | 1.05 | 0.83 | ||
BoWOX14a | 0.06 | 1.15 | 1.26 | 1.74 | S | |
BnCWOX14a | 0 | 0.44 | 2.60 | 1.92 | ||
BrWOX13c | 0 | 0 | 0.09 | 0 | D | |
BnCWOX13f | 0 | 0 | 0 | 0 | ||
BoWOX13a | 21.94 | 24.69 | 53.65 | 40.50 | S | |
BnCWOX13c | 3.90 | 14.43 | 8.26 | 14.86 | ||
BrWOX13a | 7.20 | 4.19 | 2.34 | 5.96 | S | |
BnAWOX13b | 4.03 | 8.51 | 3.32 | 11.46 | ||
Intermediate clade | BrWOX9b | 0.14 | 0 | 0.19 | 0 | S |
BnAWOX9b | 0.03 | 0 | 0.05 | 0 | ||
BoWOX9b | 0.24 | 0 | 0 | 0 | S | |
BnCWOX9c | 0.13 | 0 | 0.14 | 0 | ||
BoWOX9a | 0.37 | 0 | 0.51 | 0.06 | D | |
BnCWOX9a | 1.63 | 0.03 | 0.13 | 0.03 | ||
BrWOX8 | 0.18 | 0 | 0.56 | 0 | D | |
BnAWOX8b | 0.04 | 0 | 0.02 | 0 | ||
BoWOX8 | 0.30 | 0 | 0.12 | 0 | S | |
BnCWOX8a | 0 | 0 | 0.09 | 0 | ||
BrWOX12b | 0.24 | 0 | 0.11 | 0 | S | |
BnAWOX12c | 0.08 | 0 | 0.08 | 0 | ||
BoWOX12c | 0.22 | 0.14 | 0 | 0.09 | S | |
BnCWOX12d | 0 | 0 | 0 | 0.04 | ||
BoWOX12b | 0 | 0 | 0 | 0 | D | |
BnCWOX12a | 0 | 0 | 0 | 0 | ||
BoWOX12a | 0.09 | 0.17 | 0.11 | 0.56 | S | |
BnCWOX12b | 0 | 0 | 0 | 0 | ||
BrWOX11a | 0 | 0 | 0 | 0.21 | D | |
BnAWOX11c | 0 | 0 | 0 | 0 | ||
BrWOX11b | 0 | 0 | 0 | 0 | D | |
BnAWOX11d | 0 | 0 | 0 | 0 | ||
WUS clade | BrWOX4a | 11.13 | 1.17 | 33.37 | 43.02 | S |
BnAWOX4a | 2.13 | 1.13 | 8.17 | 19.94 | ||
BoWOX4a | 23.56 | 5.15 | 46.29 | 11.42 | S | |
BnCWOX4b | 4.08 | 1.65 | 16.69 | 30.36 | ||
BrWOX4b | 0.95 | 0.38 | 1.62 | 6.57 | S | |
BnAWOX4d | 0.79 | 0.94 | 1.55 | 16.73 | ||
BoWOX4b | 2.98 | 6.36 | 5.71 | 10.23 | S | |
BnCWOX4c | 0.19 | 0.68 | 0.31 | 3.33 | ||
BrWOX3a | 0 | 0 | 0 | 0 | S | |
BnAWOX3b | 0 | 0 | 0 | 0 | ||
BoWOX3b | 0.12 | 0 | 0 | 0 | S | |
BnCWOX3d | 0 | 0 | 0.22 | 0.10 | ||
BrWOX3b | 0.25 | 0 | 0 | 0 | S | |
BnAWOX3c | 0.31 | 0 | 0 | 0 | ||
BoWOX3a | 2.01 | 0.05 | 0 | 0 | S | |
BnCWOX3a | 0.60 | 0 | 0 | 0 | ||
BoWOX6a | 0 | 0 | 0 | 0 | D | |
BnAWOX6a | 0 | 0 | 0 | 0 | ||
BrWOX6b | 0.15 | 0 | 0 | 0 | D | |
BnCWOX6c | 0.08 | 0 | 0 | 0 | ||
BrWUSc | 0 | 0.03 | 0 | 0 | D | |
BnAWUSe | 0.04 | 0 | 0.14 | 0.28 | ||
BoWUSa | 0.41 | 0 | 0 | 0 | S | |
BnAWUSb | 0 | 0 | 0.04 | 0 | ||
BoWOX5 | 0.15 | 0.58 | 0 | 0 | S | |
BnCWOX5a | 0.33 | 0.63 | 0.13 | 0.45 | ||
BrWOX7a | 0 | 0 | 0.79 | 0 | S | |
BnAWOX7b | 0.07 | 0 | 0.13 | 0.06 | ||
BoWOX7b | 4.48 | 0.28 | 0.52 | 0 | S | |
BnCWOX7c | 1.14 | 0 | 0.13 | 0 |