Skip to main content

Advertisement

Table 1 Overiew of the used real data sets

From: aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data

Set name Average library size #Present Genes Sample size #DEs1 Used for
ABRF 54,822,037 42,613 18 29,013 DE & Type I error
SEQC 66,503,428 44,931 10 17,038 DE
MAQC-II 1,421,992 11,907 14 8387 DE
Modencodefly 13,709,954 13,244 147 Type I error
HapMap-CEU 5,187,226 12,410 41 8 DE
Bottomly 4,904,164 13,932 21 1112 DE
PrimePCR 20,801 16,603 True DE
  1. (−) indicates that the statistics are not applied. (1) the number of DEs represents average DEs reported by aFold, DESeq2 and Voom