Table 2 Number of DE genes from sex chromosomes detected by three method in the HapMap-CEU data set at a FDR-adjusted p-value of 0.05
Method | Sex1/Total2 | Sex in Top 10 (Rank) | |
|---|---|---|---|
p-value | Fold-change | ||
aFold | 7/8 | 7 | 7 |
DESeq2 | 7/12 | 7 | 5 |
Voom | 7/7 | 7 | 5 |
edgeR | 7/20 | 7 | 5 |
ABSSeq | 7/7 | 7 | 7 |
baySeq | 7/15 | 7 | 5 |
ROTS-t | 7/8 | 7 | 5 |
ROTS-q | 7/8 | 7 | 5 |