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Table 1 List of 67 named barley PUB genes with their classification, genome locus, and the number of matching ESTs from libraries categorized as originated from either abiotic- or biotic stress conditions or from vegetative or generative tissue

From: Classification of barley U-box E3 ligases and their expression patterns in response to drought and pathogen stresses

Class

Name

Gene ID

Chromosome position

No. EST from library conditions

   

Abiotic

Biotic

Generative

Vegetative

stresses

I

HvPUB1

HORVU7Hr1G108540

chr7H:625630612–625,636,687

3

 

18

14

IIa

HvPUB2

HORVU0Hr1G020210

chrUn:105982242–105,985,875

14

 

4

3

IIa

HvPUB3

HORVU1Hr1G069990

chr1H:487882055–487,884,794

25

 

16

7

IIa

HvPUB4

HORVU2Hr1G068080

chr2H:478112149–478,116,380

  

2

 

IIa

HvPUB5

HORVU2Hr1G084670

chr2H:612532269–612,544,059

    

IIa

HvPUB6

HORVU2Hr1G107270

chr2H:711398163–711,399,326

2

 

8

3

IIa

HvPUB7

HORVU3Hr1G081300

chr3H:594390155–594,392,901

8

  

2

IIa

HvPUB9

HORVU3Hr1G113910

chr3H:689573848–689,580,280

8

1

2

11

IIa

HvPUB10

HORVU4Hr1G059610

chr4H:497914351–497,923,545

7

1

8

10

IIa

HvPUB11

HORVU5Hr1G021270

chr5H:102370756–102,375,777

20

2

22

12

IIa

HvPUB12

HORVU5Hr1G021280

chr5H:102438361–102,442,824

19

2

15

10

IIa

HvPUB13

HORVU5Hr1G059280

chr5H:463207931–463,210,666

69

 

2

4

IIa

HvPUB14

HORVU6Hr1G069010

chr6H:478128962–478,134,602

6

 

14

6

IIa

HvPUB15

HORVU6Hr1G072420

chr6H:503270970–503,276,564

9

 

6

 

IIa

HvPUB16

HORVU6Hr1G073280

chr6H:507756329–507,760,902

18

 

13

9

IIa

HvPUB17

HORVU7Hr1G000780

chr7H:1309283–1,315,775

8

1

6

14

IIa

HvPUB18

HORVU7Hr1G047920

chr7H:162626044–162,632,315

    

IIa

HvPUB19

HORVU7Hr1G061800

chr7H:290933777–290,936,462

10

 

3

 

IIa

HvPUB20

HORVU7Hr1G121810

chr7H:654539257–654,541,940

  

3

2

IIa

HvPUB21

HORVU6Hr1G041430

chr6H:228200647–228,211,681

10

 

8

25

IIb

HvPUB22

HORVU2Hr1G067610

chr2H:473427629–473,435,416

    

IIb

HvPUB24

HORVU3Hr1G083500

chr3H:603823686–603,825,481

2

 

2

4

IIb

HvPUB25

HORVU5Hr1G029950

chr5H:183287072–183,291,627

19

1

13

32

IIb

HvPUB26

HORVU5Hr1G059910

chr5H:467836849–467,839,703

2

 

2

 

IIb

HvPUB28

HORVU7Hr1G039760

chr7H:105941903–105,943,737

5

 

2

 

IIb

HvPUB29

HORVU7Hr1G040790

chr7H:111351005–111,354,169

3

1

3

2

IIb

HvPUB57

HORVU6Hr1G066870

chr6H:463530777–463,532,567

    

IIb

HvPUB60

HORVU6Hr1G095130

chr6H:583093713–583,097,921

9

   

III

HvPUB31

HORVU4Hr1G070330

chr4H:574972338–574,976,289

   

2

IV

HvPUB32

HORVU1Hr1G053270

chr1H:393963164–393,967,064

1

 

3

1

IV

HvPUB33

HORVU2Hr1G013130

chr2H:28662118–28,667,022

6

  

1

IV

HvPUB34

HORVU4Hr1G017550

chr4H:78074992–78,084,602

2

1

2

1

IV

HvPUB35

HORVU4Hr1G088650

chr4H:640685328–640,696,684

 

1

1

5

IV

HvPUB36

HORVU5Hr1G060580

chr5H:474627227–474,645,070

6

  

2

IV

HvPUB37

HORVU5Hr1G077700

chr5H:553639844–553,654,837

   

1

IV

HvPUB38

HORVU6Hr1G003590

chr6H:8039677–8,048,008

  

1

 

IV

HvPUB39

HORVU6Hr1G039290

chr6H:203742583–203,750,519

    

IV

HvPUB40

HORVU6Hr1G064130

chr6H:433376429–433,381,410

 

1

 

2

IV

HvPUB41

HORVU7Hr1G018750

chr7H:25113620–25,118,764

2

 

1

7

IV

HvPUB42

HORVU7Hr1G086580

chr7H:522444326–522,451,758

14

 

11

22

V

HvPUB8

HORVU3Hr1G089040

chr3H:627083327–627,148,340

17

 

7

14

V

HvPUB23

HORVU4Hr1G064070

chr4H:536981409–536,983,117

11

1

  

V

HvPUB27

HORVU6Hr1G077120

chr6H:528582237–528,584,114

 

4

2

6

V

HvPUB30

HORVU7Hr1G046920

chr7H:155292351–155,294,342

6

 

2

6

V

HvPUB43

HORVU2Hr1G104640

chr2H:704314927–704,319,431

1

 

1

 

V

HvPUB44

HORVU3Hr1G095960

chr3H:651507615–651,508,824

    

V

HvPUB45

HORVU5Hr1G005830

chr5H:9430272–9,431,296

    

V

HvPUB46

HORVU5Hr1G081160

chr5H:563433753–563,438,456

    

V

HvPUB47

HORVU7Hr1G093780

chr7H:572254844–572,256,019

   

2

V

HvPUB48

HORVU0Hr1G003810

chrUn:17443362–17,445,805

13

  

8

V

HvPUB49

HORVU1Hr1G074180

chr1H:507187193–507,189,384

2

  

6

V

HvPUB50

HORVU2Hr1G074130

chr2H:535102978–535,105,576

10

 

10

12

V

HvPUB51

HORVU2Hr1G076470

chr2H:550697966–550,699,310

    

V

HvPUB52

HORVU2Hr1G105720

chr2H:707375224–707,377,465

2

  

5

V

HvPUB53

HORVU2Hr1G123130

chr2H:754722899–754,723,432

1

   

V

HvPUB54

HORVU4Hr1G066070

chr4H:550510764–550,513,664

2

 

21

13

V

HvPUB55

HORVU6Hr1G034250

chr6H:159856080–159,857,826

  

2

 

V

HvPUB56

HORVU6Hr1G065480

chr6H:450926585–450,933,083

4

 

2

 

V

HvPUB58

HORVU6Hr1G089560

chr6H:570052386–570,053,961

19

   

V

HvPUB59

HORVU6Hr1G089590

chr6H:570107770–570,109,318

14

   

V

HvPUB61

HORVU7Hr1G073100

chr7H:412252306–412,361,703

2

  

4

VI

HvPUB62

HORVU1Hr1G039050

chr1H:272999682–273,010,309

19

 

20

5

VI

HvPUB63

HORVU3Hr1G052520

chr3H:381485236–381,496,734

7

 

2

 

VI

HvPUB64

HORVU4Hr1G083960

chr4H:627004063–627,010,259

  

10

1

VII

HvPUB65

HORVU1Hr1G002240

chr1H:4416074–4,418,966

4

1

1

10

VII

HvPUB66

HORVU7Hr1G076230

chr7H:445084899–445,090,758

7

 

11

3

X

HvPUB67

HORVU4Hr1G022990

chr4H:122902796–122,907,027

9

 

8

8