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Table 6 Running time of LDDMS1, LDDMS2, LDDMS3 on real data

From: Novel algorithms for LDD motif search

Datasets l d 1 d 2 LDDMS1 LDDMS2 LDDMS3
dm01r 18 5 0 2.04 m 4.15 s 3.42 s
    2 2.03 m 1.61 h 6.67 s
  19 5 0 17.46 s 4.43 s 3.33 s
    2 17.35 s 1.92 h 5.40 s
dm03r 18 4 0 14.80 s 4.64 s 2.73 s
    2 14.73 s 1.78 h 3.49 s
  19 4 0 3.30 s 4.86 s 2.83 s
    2 3.29 s 2.07 h 3.22 s
dm04r 18 5 0 4.37 m 7.16 s 5.89 s
    2 4.37 m 2.83 h 11.17 s
  19 5 0 42.32 s 7.74 s 5.80 s
    2 42.48 s 3.35 h 9.03 s
dm05r 18 4 0 10.70 s 7.03 s 4.07 s
    2 10.79 s 2.68 h 4.77 s
  19 4 0 2.32 s 6.90 s 4.21 s
    2 2.31 s 3.15 h 4.55 s
  1. Time is in seconds (s), minutes (m) or hours (h)
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BMC Genomics

ISSN: 1471-2164

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