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Fig. 4 | BMC Genomics

Fig. 4

From: Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

Fig. 4

Comparisons of the change in the number of similar transcripts in the starting organism that are 80% full length transcripts (100% full length transcripts when S. pombe is the starting organism) and recovered by Oases and Trans-ABySS to the change in the ones recovered by extVelvet and extABySS respectively over the ones recovered by Velvet and ABySS respectively for different values of k and k-mer coverage cutoff c. Notations are the same as in Figure 3. These transcripts are the ones in which 80% (100% when S. pombe is the starting organism) of the coding region is included in the best BLAST alignment

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BMC Genomics

ISSN: 1471-2164

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