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Table 2 Number of differentially expressed genes recovered from M. albus and M. siculus when our algorithm is applied to A. thaliana and M. truncatula from libraries associated with one condition versus another condition in the 25_3 assembly, with organism indicating the starting organism and its related organism, SvsC indicating salt tolerance versus control, WvsC indicating waterlogging tolerance versus control, SWvsC indicating salt and waterlogging tolerance versus control, SWvsS indicating salt and waterlogging tolerance versus salt tolerance, and SWvsW indicating salt and waterlogging tolerance versus waterlogging tolerance

From: Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

Organism

SvsC

WvsC

SWvsC

SWvsS

SWvsW

M. alb to A. tha

8

141

81

47

12

M. sic to A. tha

39

7

10

45

8

M. alb to M. tru

11

220

114

86

17

M. sic to M. tru

74

24

31

84

12