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Table 2 Comparison of the four tools on different insert size data

From: GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads

Methods

Insert size

 

180

2283 to 2803

Combined

GAPPadder

862

1481

1670

GapCloser

1142

216

1184

GapFiller

484

173

732

Sealer

468

308

559

  1. Three groups of data of insert sizes (180, about 2500 and about 35 kb) of human chromosome 14, and their combination are used for comparison. Results are given for reads with 180 bp insert size only, and reads with 2500 bp insert size only and combined reads (with 180 bp, 2500 bp and 35 kb insert sizes)