Table 1 Summary of quality statistics of Trinity assembly of the RNA-seq data of P. ginseng
Trinity assembly | Sequence |
|---|---|
Counts of transcripts | |
 Total trinity genes | 48,165 |
 Total trinity transcripts | 84,542 |
 Percent GC (%) | 40.73 |
Stats based on all transcript contigs | |
 Contig N50 (bp) | 1667 |
 Median contig length (bp) | 1060 |
 Average contig (bp) | 1268.41 |
 Total assembled bases (bp) | 107,234,113 |
Stats based on only longest isoform per gene | |
 Contig N50 (bp) | 1714 |
 Median contig length (bp) | 992 |
 Average contig (bp) | 1242.54 |
 Total assembled bases (bp) | 59,846,708 |