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Table 1 The homologs of the virulence-related genes in V. cholerae with a coverage ratio for all the strains in the top 20%

From: Expanding dynamics of the virulence-related gene variations in the toxigenic Vibrio cholerae serogroup O1

Name Total Unique Copy Genotype GeneNum/ Genotype Core Significance
ctxA 317 314 1 6 52.83 +    
ctxB 320 314 1 10 32 +     
flrA 919 314 1 10 91.9 +   + + +
fleR/flrC 1517 314 1 23 65.96 +     
vasJ 314 314 0 6 52.33 +     
mshJ 314 314 0 5 62.8 +     +
mshF 314 314 0 3 104.67 +     
rtxB 3473 314 1 57 60.93 +     
viuC 3984 314 1 41 97.17 +   + + +
tlh 314 314 0 3 104.67 +     
epsM 314 314 0 2 157 +     +
epsG 314 314 0 1 314 +     
viuD 922 314 1 8 115.25 +     
vctD 314 314 0 3 104.67 +     
flaA 1536 314 1 32 48 +   + +  
flgE 314 314 0 1 314 +     
flgD 314 314 0 2 157 +     
cheV 1246 314 1 15 83.07 +   + +  
fliQ 314 314 0 1 314 +     
cheW 944 314 1 9 104.89 +     +
cheB 874 314 1 17 51.41 +   + + +
cheZ 314 314 0 2 157 +     
cheY 1282 314 1 30 42.73 +   +
epsB 314 314 0 4 78.5 +     +
flgP 314 314 0 3 104.67 +     +
acfB 2059 313 1 32 64.34   + +  
ace 316 313 1 1 316     +
vasC 313 313 0 4 78.25     +
vasD 313 313 0 2 156.5     +
vasI 313 313 0 3 104.33     +
vipB/mglB 313 313 0 2 156.5     +
mshM 319 313 1 6 53.17    
mshG 313 313 0 3 104.33     
mshD 313 313 0 2 156.5     
rtxB 1466 313 1 13 112.77   + +  
  1. Note: Total: the number of genes in all strains; Unique: the number of strains having that gene; Copy: if the gene has duplicated genes in more than one strains, it tagged as 1, otherwise as 0. Genotype: the number of genotypes for the homolog. GeneNum/Genotype: the average number of genes of the homolog contributing to a genotype, i.e., the number of genes per genotype. Core: “+” indicates that it is a core virulence gene,“-” indicate it is not a core virulence gene. Significance: “+” indicates it is positive correlated with isolation years of strains, while “-” indicates it is negatively correlated with them; indicated the gain and loss of the gene; indicated the number of genotypes of that homologous gene; indicated the duplicated gene number in each strain; indicated the gene variation