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Table 4 Gene ontology terms overrepresented among differentially expressed genes in muscle

From: A comparative analysis of the transcriptome profiles of liver and muscle tissue in pigs divergent for feed efficiency

Term

Count

B-H p-value

GO terms overrepresented among DEGs with higher expression in the LRFI group vs HRFI

 GO:0006464~cellular protein modification process

765

1.75E-16

 GO:0016070~RNA metabolic process

882

1.05E-12

 GO:0010467~gene expression

987

1.05E-12

 GO:0007049~cell cycle

371

4.46E-12

 GO:0051171~regulation of nitrogen compound metabolic process

831

2.62E-11

 GO:0034645~cellular macromolecule biosynthetic process

921

2.43E-10

 GO:0006351~transcription, DNA-templated

684

2.94E-09

 GO:0070647~protein modification by small protein conjugation or removal

235

2.69E-08

 GO:0051276~chromosome organisation

256

5.62E-07

 GO:0006396~RNA processing

206

5.83E-07

GO terms overrepresented among DEGs with lower expression in the LRFI group vs HRFI

 GO:0007005~mitochondrion organization

204

1.31E-21

 GO:0045184~establishment of protein localisation

445

1.64E-14

 GO:0043603~cellular amide metabolic process

241

3.11E-11

 GO:1901566~organonitrogen compound biosynthetic process

311

5.75E-11

 GO:0033036~macromolecule localisation

562

1.57E-10

 GO:0051641~cellular localisation

514

2.00E-10

 GO:0006412~translation

167

5.88E-10

 GO:0006091~generation of precursor metabolites and energy

112

1.15E-09

 GO:0009199~ribonucleoside triphosphate metabolic process

87

4.70E-09

 GO:0055114~oxidation-reduction process

228

8.67E-09