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Table 3 Information on the 20 stable QTLs

From: Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq

Loci

QTL

Marker interval

Physical interval (bp)

loci1

qCD-1(ES)

mk258-mk259

Chr.1: 38,550,000-38,900,000

loci2

qCD-2-2(LS)

mk375-mk376

Chr.2: 9,850,000-9,950,000

loci3

qCL-3-1(LS); qCSA-3(LS); qCV-3(LS)

mk589-mk593

Chr.3: 4,750,000-5,150,000

loci4

qCD-3-1(LS)

mk623-mk624

Chr.3: 8,350,000-8,450,000

loci5

qCD-3-2(LS)

mk646-mk647

Chr.3: 10,950,000–11,050,000

loci6

qCD-4-1(LS)

mk1005-mk1006

Chr.4: 19,450,000–19,550,000

loci7

qCL-6(ES)

mk1329-mk1330

Chr.6: 550,000-650,000

loci8

qCV-6-1(LS); qCSA-6(ES); qCSA-6(LS)

mk1402-mk1406

Chr.6: 9,850,000–10,300,000

loci9

qCD-7(ES); qCD-7(LS)

mk1758-mk1759

Chr.7: 26,550,000-26,650,000

loci10

qCV-9(ES); qCD-9-2(LS)

mk2124-mk2125

Chr.9: 20,850,000-20,950,000

loci11

qCL-10(ES)

mk2299-mk2300

Chr.10: 22,350,000-22,550,000

loci12

qCSA-12–1(LS);qCL-12(LS)

mk2668-mk2673

Chr.12: 21,250,000-21,900,000

loci13

qCSA-12–2(ES)

mk2708-mk2709

Chr.12: 26,800,000-26,950,000